View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4456_high_1 (Length: 398)

Name: NF4456_high_1
Description: NF4456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4456_high_1
NF4456_high_1
[»] chr5 (8 HSPs)
chr5 (16-180)||(34241583-34241747)
chr5 (225-379)||(34241386-34241538)
chr5 (249-379)||(34233613-34233743)
chr5 (270-358)||(42116871-42116960)
chr5 (292-358)||(42128052-42128118)
chr5 (250-358)||(42122614-42122723)
chr5 (287-365)||(41572853-41572929)
chr5 (130-180)||(34234338-34234388)
[»] chr2 (3 HSPs)
chr2 (282-344)||(32682495-32682557)
chr2 (250-322)||(11995282-11995353)
chr2 (285-322)||(12247609-12247646)
[»] chr4 (1 HSPs)
chr4 (273-358)||(11117294-11117380)
[»] chr8 (1 HSPs)
chr8 (273-310)||(30021068-30021105)
[»] chr3 (1 HSPs)
chr3 (282-358)||(8522263-8522340)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 34241747 - 34241583
Alignment:
Q  16 gatgaagtataataacacagaatcaaaaactctaactccattttcatcctgggaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34241747 gatgaagtataataacacagaatcaaaaactctaactccattttcatcctggaaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt 34241648  T
Q  116 ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241647 ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 34241583  T

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Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 225 - 379
Target Start/End: Complemental strand, 34241538 - 34241386
Alignment:
Q  225 ctagatcaaataagaatgagtcgatagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccaga 324  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  34241538 ctagatcaaataagaatgagtcgatagattgtcaaactcacatcaaaacttattttaaacaga--gtaaaaactaacacacaatagagaaaataaccaga 34241441  T
Q  325 ataataaaactatgacatttgcaccatcttattcatggttggaccattgtttctc 379  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34241440 ataataaaactatgacatttgcaccatctgattcatggttggaccattgtttctc 34241386  T

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Target: chr5; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 34233743 - 34233613
Alignment:
Q  249 tagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacaca--atagagaaaataaccagaataataaaactatgacatttgc 346  Q
    |||||||| ||||||||| ||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  34233743 tagattgttacactcacaccaaaacttattttaaacaga--gtaaaaactaacacacacaatagagaaaataaccagaataataaaactatgacatttgc 34233646  T
Q  347 accatcttattcatggttggaccattgtttctc 379  Q
    ||||||| |||||||||||||||||||||||||    
T  34233645 accatctgattcatggttggaccattgtttctc 34233613  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 358
Target Start/End: Original strand, 42116871 - 42116960
Alignment:
Q  270 aaacttattttaaacagaaagtaaaa-actaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 358  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||    
T  42116871 aaacttattttaagaagaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattc 42116960  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 42128052 - 42128118
Alignment:
Q  292 aaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 358  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  42128052 aaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattc 42128118  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 358
Target Start/End: Original strand, 42122614 - 42122723
Alignment:
Q  250 agattgtcacactcaca-tcaaaacttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgca 347  Q
    ||||||||||||||| | |||| | ||||||||||||||||||||||| | ||||||||| ||| ||| |||| | || |||||||||||||||||||||    
T  42122614 agattgtcacactcaaaatcaaga-ttattttaaacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgca 42122712  T
Q  348 ccatcttattc 358  Q
    |||||| ||||    
T  42122713 ccatctgattc 42122723  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 41572929 - 41572853
Alignment:
Q  287 aaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattcatggttg 365  Q
    |||| ||||||||||||| ||  |||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||    
T  41572929 aaaggaaaaactaacacagaa--gagaaaataatcagaacaataaaactatcacatctgcaccatctaattcatggttg 41572853  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 34234388 - 34234338
Alignment:
Q  130 tttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 180  Q
    |||| ||||||||||||| |||||||||||||||||| || | ||||||||    
T  34234388 tttctgtttgtgtacttgcaaaactcaattttgtactaataagattagatg 34234338  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 32682557 - 32682495
Alignment:
Q  282 aacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacattt 344  Q
    |||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||    
T  32682557 aacagaaagtaaaaactaacacacaatagagaaaataagcacaacaataagactatgacattt 32682495  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 11995353 - 11995282
Alignment:
Q  250 agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataacca 322  Q
    ||||| ||||||||| |||||| ||||||| ||| | || |||||||||||||||||||||||||||||||||    
T  11995353 agattatcacactcagatcaaa-cttatttaaaatacaaggtaaaaactaacacacaatagagaaaataacca 11995282  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 12247609 - 12247646
Alignment:
Q  285 agaaagtaaaaactaacacacaatagagaaaataacca 322  Q
    |||| |||||||||||||||||||||||||||||||||    
T  12247609 agaaggtaaaaactaacacacaatagagaaaataacca 12247646  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 11117294 - 11117380
Alignment:
Q  273 cttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 358  Q
    |||||||||||||||||||||||| | ||||| |||  |||||| |||| |  | ||||||||||||||||||||||||||| ||||    
T  11117294 cttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattc 11117380  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 30021068 - 30021105
Alignment:
Q  273 cttattttaaacagaaagtaaaaactaacacacaatag 310  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  30021068 cttattttaaatagaaggtaaaaactaacacacaatag 30021105  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 8522263 - 8522340
Alignment:
Q  282 aacagaaagtaaaaact-aacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 358  Q
    ||||||||||||||||  |||| |||| |||||||||||  | || || ||||||| |||||||||||||||| ||||    
T  8522263 aacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaacaaaactacgacatttgcaccatctgattc 8522340  T

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