View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4456_high_2 (Length: 340)
Name: NF4456_high_2
Description: NF4456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4456_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 7809456 - 7809188
Alignment:
| Q |
18 |
atatggcaattggcaattgccacccaatccaaaggtcactctcaatatgccaagacaaagtgtaaatccatttcaaagcttgtcatatactatgaccatt |
117 |
Q |
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| T |
7809456 |
atatggcaattggcaattgccacccaatccaaaggtcactctcaatatgccaagacaaagtgtaaatccatttcaaagtttgttatacactatgaccatt |
7809357 |
T |
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| Q |
118 |
ttaaggtcgctctcaagttcaatttaacatttgcatcaaatctttaaataattatattcgaagtgtatcagacactaaatacaaatacatcttcagccaa |
217 |
Q |
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| T |
7809356 |
ttaaggtcgctctcaagttcaacttaacatttgcatcaaatctttaaataattatattcgaagcgtgtcagacactaaatataaatacatcttcagccaa |
7809257 |
T |
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| Q |
218 |
aattcgaaaattgattcctcacattatttgagtataacccactagtcccaaccacaattgttattaaca |
286 |
Q |
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| T |
7809256 |
aattcgaatattgattcctcacattatttgagtataacccactagtcccaaccacaattgttattaaca |
7809188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 7809185 - 7809154
Alignment:
| Q |
302 |
cttaaactaagaatcattccattttcatctca |
333 |
Q |
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| T |
7809185 |
cttaaactaagaatcattccattttcatctca |
7809154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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