View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4456_low_1 (Length: 650)

Name: NF4456_low_1
Description: NF4456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4456_low_1
NF4456_low_1
[»] chr2 (6 HSPs)
chr2 (10-630)||(5830013-5830633)
chr2 (10-521)||(5767799-5768305)
chr2 (11-181)||(5825920-5826090)
chr2 (279-550)||(5826408-5826679)
chr2 (339-550)||(5781920-5782131)
chr2 (55-179)||(5781382-5781506)
[»] chr6 (1 HSPs)
chr6 (10-612)||(29327549-29328160)
[»] scaffold0159 (3 HSPs)
scaffold0159 (339-550)||(27252-27463)
scaffold0159 (339-550)||(35383-35594)
scaffold0159 (55-179)||(26714-26838)


Alignment Details
Target: chr2 (Bit Score: 609; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 10 - 630
Target Start/End: Complemental strand, 5830633 - 5830013
Alignment:
Q  10 caaaggtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgttttt 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5830633 caaaggtgatggacatgtacagtaaaaaatgtttaggcccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgttttt 5830534  T
Q  110 agttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagttttcagggtacaatcactc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5830533 agttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagttttcagggtacaatcactc 5830434  T
Q  210 aaccaacttagcatgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggttttctttgctttaacaatgacggcaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5830433 aaccaacttagcatgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggttttctttgctttaacaatgacggcaa 5830334  T
Q  310 tcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5830333 tcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattctgcagcttcaatatttgaaattattgacagcaaacctgatattga 5830234  T
Q  410 ttccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaatt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5830233 ttccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaatt 5830134  T
Q  510 ttcaaagatttaagcctaagcatcccatctgcaaaggtaatgttttggttgtacaaacccgtttgttgagaatatgtaatgtatttaaattgatgatata 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5830133 ttcaaagatttaagcctaagcatcccatctgcaaaggtaatgttttggttgtacaaacccatttgttgagaatatgtaatgtatttaaattgatgatata 5830034  T
Q  610 tgtctttgcagactattgcct 630  Q
    |||||||||||||||||||||    
T  5830033 tgtctttgcagactattgcct 5830013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 10 - 521
Target Start/End: Original strand, 5767799 - 5768305
Alignment:
Q  10 caaaggtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgttttt 109  Q
    ||||||||||||| ||||||   || ||||||| ||| ||||  |||||||| ||||  |  |||||||| ||||||  ||||||||| | ||| ||| |    
T  5767799 caaaggtgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcattcagggcttgtgagtggtgcaggatttggtttctcttttgt 5767898  T
Q  110 agttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagttttcagggtacaatcactc 209  Q
     | |||||||||||  | ||||||   ||| |||||||||||||| |||||||||||||| ||||||||||||  ||||||||||| ||||||| || ||    
T  5767899 cgctctatattgcatgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtacaa-caatc 5767997  T
Q  210 aaccaacttagc-atgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggttttctttgctttaacaatgacggca 308  Q
    || |||||||   || ||  | ||||||||   |  || || | ||     ||| |  ||||| ||||| ||||||||||||  |||||| || || |||    
T  5767998 aatcaacttaaagattctcaacatttacttgattcctttttgtcat-----tctcatgagatattttatgcaggttttctttagtttaactataacagca 5768092  T
Q  309 atcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattg 408  Q
     | | | |||| ||| | | ||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||| | ||||| || |||  ||| |    
T  5768093 gtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagcttcaatatttgaaattctagacagtaaccctactatcg 5768192  T
Q  409 attccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaat 508  Q
    | |||||||||||||  ||||| |||  |||||||||    || |||||||||||||||||||||| ||| |||||||||||||| ||  ||||||||||    
T  5768193 actccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatgtcagcttcaattacccaacaagacctcacattcaaat 5768292  T
Q  509 tttcaaagattta 521  Q
    |||||||||||||    
T  5768293 tttcaaagattta 5768305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 5825920 - 5826090
Alignment:
Q  11 aaaggtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgttttta 110  Q
    |||||||||||| ||||||   |||||||||| ||  ||||  |||||||| ||| | ||||| |||||||||||||||||||| || | ||| |||||     
T  5825920 aaaggtgatggatatgtaccagaaaaaatgttcagcaccagaaaaacaaggtgttaggttgggacttgttagtggtataggattcggtttctcatttttt 5826019  T
Q  111 gttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttt 181  Q
    | |||||| |||||||||||||||  ||| ||||||||||| |||||  ||||||||||||||||||||||    
T  5826020 gctctatactgcacaaatgctttctgtttctacataggatcagttcttatgcaacacggcaaagcaacttt 5826090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 279 - 550
Target Start/End: Original strand, 5826408 - 5826679
Alignment:
Q  279 caggttttctttgctttaacaatgacggcaatcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattccgcagcttcaatat 378  Q
    |||||||||||   ||||||||| || ||||| |  ||||||||||| | | | || |||||||| ||||||||||||||||||||  ||||||||||||    
T  5826408 caggttttcttctgtttaacaattacagcaataggtgtttcgcagactagtgctttagcaccagatactaacaaggccaaagattctacagcttcaatat 5826507  T
Q  379 ttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactt 478  Q
    |||||||| | |||||||||||    ||||| || || || |||| |||||  || | |||||| ||    |||||| ||||||||||| | |||| |||    
T  5826508 ttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactgtgaaaggtgattttgaacttcaaaaagtcagctt 5826607  T
Q  479 taattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatctgcaaaggtaat 550  Q
    ||  ||||||||||||||  | |||||||| |||||||||||  | || ||||||||| ||| |||||||||    
T  5826608 tagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaaggtaat 5826679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 339 - 550
Target Start/End: Original strand, 5781920 - 5782131
Alignment:
Q  339 ccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgag 438  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||| | |||||||||||    ||||| || || || |||| |||||  || | ||    
T  5781920 ccagatactaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctag 5782019  T
Q  439 aaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatc 538  Q
    |||| ||    |||||| ||||||||||| | |||| |||||  ||||||||||||||  | |||||||| |||||||||||  | || ||||||||| |    
T  5782020 aaactgtgaaaggtgattttgaacttcaaaaagtcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagc 5782119  T
Q  539 tgcaaaggtaat 550  Q
    || |||||||||    
T  5782120 tggaaaggtaat 5782131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 5781382 - 5781506
Alignment:
Q  55 aacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttctatattgcacaaatgctttcattttttacataggatctgt 154  Q
    ||||||| ||| | ||||| |||||||||||| |||||||||| | ||  ||||| | ||| || |||||||||| ||||  ||| ||||||||||| ||    
T  5781382 aacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatttctgtttctacataggatcagt 5781481  T
Q  155 tctagtgcaacacggcaaagcaact 179  Q
    |||  || |||| ||||||||||||    
T  5781482 tcttatggaacatggcaaagcaact 5781506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 225; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 10 - 612
Target Start/End: Complemental strand, 29328160 - 29327549
Alignment:
Q  10 caaaggtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgttttt 109  Q
    |||||||||||||||||||| | ||||||||||  || |||||||||||||| ||||||| |||||||||||||||| |||||||||| |  || |||||    
T  29328160 caaaggtgatggacatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatctttttt 29328061  T
Q  110 agttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagttttcagggtaca----at- 204  Q
    | ||||||||||||||||||||||||| || |||||||||||| || ||||||| ||| | |||||||| |||  |||| |||||||||||||    ||     
T  29328060 aattctatattgcacaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtacagatgatt 29327961  T
Q  205 ---cactcaaccaacttagcatgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggttttctttgctttaacaat 301  Q
       || ||| | ||||| || |  ||||||||||||   ||||||  ||| |||| |||||||||| |||| |||| ||||||||||||  ||| |||||    
T  29327960 ttacaatcacctaacttggcttaatttatatttactca-atgtttcctttaatctggttcttacaaaataaattatgcaggttttctttagtttgacaat 29327862  T
Q  302 gacggcaatcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacct 401  Q
    ||| |||||  | ||||| ||| |  ||||||||   || |||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||    
T  29327861 gacagcaatgtctgtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacct 29327762  T
Q  402 gatattgattccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgaca 501  Q
    ||||||||||||||||||||||  |||||||||| |||||| || |||||  | || ||||||||||| |||||||||| |||||||||||| |||||||    
T  29327761 gatattgattccagcagcaatgatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtcaactttagttacccaacaagacccgaca 29327662  T
Q  502 ttcaaattttcaaagatttaagcctaagcatcccatctgcaaaggtaatgttttggttgtacaaacccgtttgttgagaatatgta----atgtatttaa 597  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  |||| ||| |||||| | |  | |||||||| ||||    ||||||||||    
T  29327661 ttcaaattttcaaagatttaaccctaagcatcccatctgcaaaggtaaacttttagttctacaaatcag--tattgagaatgtgtaaagtatgtatttaa 29327564  T
Q  598 attgatgatatatgt 612  Q
    |||||||||||||||    
T  29327563 attgatgatatatgt 29327549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 339 - 550
Target Start/End: Original strand, 27252 - 27463
Alignment:
Q  339 ccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgag 438  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||| | |||||||||||    ||||| || || || |||| |||||  || | ||    
T  27252 ccagatactaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctag 27351  T
Q  439 aaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatc 538  Q
    |||| ||    |||||| ||||||||||| | |||| |||||  ||||||||||||||  | |||||||| |||||||||||  | || ||||||||| |    
T  27352 aaactgtgaaaggtgattttgaacttcaaaaagtcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagc 27451  T
Q  539 tgcaaaggtaat 550  Q
    || |||||||||    
T  27452 tggaaaggtaat 27463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 339 - 550
Target Start/End: Original strand, 35383 - 35594
Alignment:
Q  339 ccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgag 438  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||| | |||||||||||    ||||| || || || |||| |||||  || | ||    
T  35383 ccagatactaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctag 35482  T
Q  439 aaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatc 538  Q
    |||| ||    |||||| ||||||||||| | |||| |||||  ||||||||||||||  | |||||||| |||||||||||  | || ||||||||| |    
T  35483 aaactgtgaaaggtgattttgaacttcaaaaagtcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagc 35582  T
Q  539 tgcaaaggtaat 550  Q
    || |||||||||    
T  35583 tggaaaggtaat 35594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 26714 - 26838
Alignment:
Q  55 aacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttctatattgcacaaatgctttcattttttacataggatctgt 154  Q
    ||||||| ||| | ||||| |||||||||||| |||||||||| | ||  ||||| | ||| || |||||||||| ||||  ||| ||||||||||| ||    
T  26714 aacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatttctgtttctacataggatcagt 26813  T
Q  155 tctagtgcaacacggcaaagcaact 179  Q
    |||  || |||| ||||||||||||    
T  26814 tcttatggaacatggcaaagcaact 26838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University