View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4457-Insertion-2 (Length: 919)
Name: NF4457-Insertion-2
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4457-Insertion-2 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 446 - 919
Target Start/End: Complemental strand, 27184211 - 27183732
Alignment:
| Q |
446 |
tagactcataaaccttcaggttgaaaactttaagcttttactacaaaagcaattaactgtttattcctccaattggaccaaggtttttcttgtagagtac |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27184211 |
tagactcataaaccttcaggttgaaaactttaagctgttactacaaaagcaattaactgtttattcctccaattggaccaaggtttttcttgtagagtac |
27184112 |
T |
|
| Q |
546 |
aatttgacatacatgacttgcacctttaaaaccgatctcctcaatcacctcggttgttaaatcaaaacaagctattttaccattctttttatttatgaat |
645 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27184111 |
aatttgacatacgcgacttgcacctttaaaatcgatctcctcaatcacctcggttgttaaatcaaaacaagctattttaccattctttttatttatgaat |
27184012 |
T |
|
| Q |
646 |
atatttccgttcttctcggctgcgataacatgattaacataagatgaaggtccaatatcgaagagtgtaatccatgattctttgacaccaatttcaccca |
745 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27184011 |
atatttccgttcttcccggctgcgataacatgattaacataagatgaaggtccaatatcgaagagtttaatccatgattctttgacaccaatttcaccca |
27183912 |
T |
|
| Q |
746 |
atatcgatatggtgtaagacttggttgtagaataatctgtgatcatcgctatggacccatttaacaccaccaatctagaaa------aagaaggatgatg |
839 |
Q |
| |
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| |||||||||||||||||||||||| || | |||||||||||||||| || | ||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
27183911 |
aaatcgatatggtgtaagacttggttatatagtaatctgtgatcatcgataagaacccatttaacaccaccaatctagaaatagaataagaacgatgatg |
27183812 |
T |
|
| Q |
840 |
ccaatctattggtgtagtgaaaaacacatcattggccaagttaaatgacacaacacaaattgtttcatcatctaaaaccc |
919 |
Q |
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|| | ||||||||||||||||||| |||||||||||||| ||| ||||||||||| || || || |||||||| |||||| |
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| T |
27183811 |
cctaactattggtgtagtgaaaaatacatcattggccaaattatatgacacaacagaagtttttccatcatctgaaaccc |
27183732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Complemental strand, 27184812 - 27184357
Alignment:
| Q |
8 |
gtctctacaacaatctttcatcctttctctcaacaaacaaatcttacattatgtagttggtgtaattttcactccattttaaactttgggaagatagata |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27184812 |
gtctctacaacaatctttcatcctttctctcaacaaacaaatcttacattatgtagttggtgtaattttcactccattttaaactttgggaagatagata |
27184713 |
T |
|
| Q |
108 |
aataactaaatactaatcctaaaaagagaactatatgtagttagatgacagtgtatcttcc----aataataaaatgataatggaagtaatcaacccaaa |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27184712 |
aataactaaatactaatcctaaaaagagaactatatgtagttagatgacagtgtatcttccaaataataataaaatgataatggaagtaatcaacccaaa |
27184613 |
T |
|
| Q |
204 |
atcatcaaataattccatgaatcagtcttaatctaatgaacattagagaatataaaatagatttacctgttttatatat------------ttcatttaa |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27184612 |
atcatcaaataattccatgaatcagtcttaatctaatgaaaattagagaatataaaatagatttacctgttttatatatttcatttaatacttcatttaa |
27184513 |
T |
|
| Q |
292 |
caaattgttttctaagcatacaaagacagaggggnnnnnnnttcattagtaatacacaaagacaagtgagcaggtaagtaaagcaaaaatcagtctatta |
391 |
Q |
| |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27184512 |
caaattgttttctaagcatacaaagacagagaggaaaaaaattcattagtaatacacaaagacaagtgagcaggtaagtaaagcaaaaatcagtctaata |
27184413 |
T |
|
| Q |
392 |
tgtcatagaaagtactgcatcctattatttaatacatcattaaatctgagtaacta |
447 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
27184412 |
tgtcatagaaagtactgcatcctattatttaatacagcattaaatcttagtaacta |
27184357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 401 - 918
Target Start/End: Original strand, 27229995 - 27230512
Alignment:
| Q |
401 |
aagtactgcatcctattatttaatacatcattaaatctgagtaactagactcataaaccttcaggttgaaaactttaagcttttactacaaaagcaatta |
500 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||| || | |||||||||||||||||||| |||||||||||||||| |
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|
| T |
27229995 |
aagtactgcatcctattgtttaataaagcattaaatcttagtaactagactcataaatctcctggttgaaaactttaagctttgactacaaaagcaatta |
27230094 |
T |
|
| Q |
501 |
actgtttattcctccaattggaccaaggtttttcttgtagagtacaatttgacatacatgacttgcacctttaaaaccgatctcctcaatcacctcggtt |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |||| || | | |||||||||||||||||||||||||| |||| |
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|
| T |
27230095 |
actgtttattcctccaattggaccaaggtttttcttgtaatgtactatttgacaaatatgaatttctcttttaaaaccgatctcctcaatcaccttggtt |
27230194 |
T |
|
| Q |
601 |
gttaaatcaaaacaagctattttaccattctttttatttatgaatatatttccgttcttctcggctgcgataacatgattaacataagatgaaggtccaa |
700 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | || ||| |||||||||||| |||||| || |||| |||| || ||||||||||||| ||||||||| |
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|
| T |
27230195 |
gttaaatcaaagcaagctattttaccattctctatacttaagaatatatttcctttcttcccgactgcaataatatcattaacataagataaaggtccaa |
27230294 |
T |
|
| Q |
701 |
tatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatggtgtaagacttggttgtagaataatctgtgatcatcgctatgga |
800 |
Q |
| |
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||||||||||| || |||||||||| ||||||||||| |||||||| || |||||||||||||||| ||| | | |||| |||||||||||||||| | |
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|
| T |
27230295 |
tatcgaagagtctagtccatgattccttgacaccaatctcacccaaaattgatatggtgtaagactcggtagcatgataacgtgtgatcatcgctatgaa |
27230394 |
T |
|
| Q |
801 |
cccatttaacaccaccaatctagaaaaagaaggatgatgccaatctattggtgtagtgaaaaacacatcattggccaagttaaatgacacaacacaaatt |
900 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || |
|
|
| T |
27230395 |
cccatttaacaccgccaatctaaaagaagaacgatgatgccaatctattggtgtagtgaaaaacacatcattggtcaagttaaatgacacaacaaaagtt |
27230494 |
T |
|
| Q |
901 |
gtttcatcatctaaaacc |
918 |
Q |
| |
|
||| ||| |||| ||||| |
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|
| T |
27230495 |
gttccattatctgaaacc |
27230512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 568 - 756
Target Start/End: Original strand, 13472793 - 13472984
Alignment:
| Q |
568 |
cctttaaaaccgatctcctcaatcacc-tc--ggttgttaaatcaaaacaagctattttaccattctttttatttatgaatatatttccgttcttctcgg |
664 |
Q |
| |
|
||||||| | ||||||||||||||| | || ||| |||||||||||||||||||||||||||| |||||||| | ||||||||| || || ||| | | |
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|
| T |
13472793 |
cctttaacatcgatctcctcaatcatcatcatggtagttaaatcaaaacaagctattttaccatcttttttattgaagaatatattgccctttttcccag |
13472892 |
T |
|
| Q |
665 |
ctgcgataacatgattaacataagatgaaggtccaatatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatg |
756 |
Q |
| |
|
|||||||| ||| | || |||| ||||| | ||||| |||||| || ||||||||||||||||||| ||||||||||| || |||||| |
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|
| T |
13472893 |
ctgcgatagaatgttcaatggaagacaaaggttcgatatcaaagagtctagtccatgattctttgacaccgatttcacccaaaattgatatg |
13472984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 27186020 - 27185889
Alignment:
| Q |
115 |
aaatactaatcctaaaaagagaactatat---gtagtta-gatgacagtgtatcttccaa----taataaaatgataatggaagtaatcaacccaaaatc |
206 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||| ||||||||| || ||||||| ||||| |||||||||||||||||| || || ||| |
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|
| T |
27186020 |
aaatactaatcctaaaaagagaagtatacaaggtaattaagatgacagtttaacttccaaataataatagaatgataatggaagtaattaatagaacatc |
27185921 |
T |
|
| Q |
207 |
atcaaataattccatgaatcagtcttaatcta |
238 |
Q |
| |
|
| ||||||||||||| || |||||||||||| |
|
|
| T |
27185920 |
accaaataattccatctataagtcttaatcta |
27185889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 27229436 - 27229478
Alignment:
| Q |
204 |
atcatcaaataattccatgaatcagtcttaatctaatgaacat |
246 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
27229436 |
atcaccaaataattccatgtatcagtcttaatctattgaacat |
27229478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 692 - 756
Target Start/End: Complemental strand, 13281153 - 13281089
Alignment:
| Q |
692 |
aaggtccaatatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatg |
756 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
13281153 |
aaggtccaacatcgaagagtctagtccatgattctttaacaccaatttcacccaaaattgatatg |
13281089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 756
Target Start/End: Complemental strand, 28995047 - 28994983
Alignment:
| Q |
692 |
aaggtccaatatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatg |
756 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||| || |||||| |
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|
| T |
28995047 |
aaggtccaatatcgaagagtctaaaccatgattcaccgacaccaatttcacccaagattgatatg |
28994983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 705 - 755
Target Start/End: Complemental strand, 9764560 - 9764510
Alignment:
| Q |
705 |
gaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatat |
755 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| ||||||||| || ||||| |
|
|
| T |
9764560 |
gaagagtctaatccatgattccttgacaccaagttcacccaaaattgatat |
9764510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 619
Target Start/End: Original strand, 19163113 - 19163163
Alignment:
| Q |
569 |
ctttaaaaccgatctcctcaatcacctcggttgttaaatcaaaacaagcta |
619 |
Q |
| |
|
|||||| ||| ||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
19163113 |
ctttaacaccaatctcctcaatcatcccggtagttaaatcaaaacaagcta |
19163163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 756
Target Start/End: Original strand, 28867117 - 28867178
Alignment:
| Q |
695 |
gtccaatatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatg |
756 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||| | ||||||||||||||||| || |||||| |
|
|
| T |
28867117 |
gtccaatattgaagagtctaacccatgattcctcaacaccaatttcacccaagattgatatg |
28867178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 28068824 - 28068778
Alignment:
| Q |
10 |
ctctacaacaatctttcatcctttctctcaacaaacaaatcttacat |
56 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||| |||||||||| |
|
|
| T |
28068824 |
ctctacaacaatctttaatcctttttctcaaaaaaccaatcttacat |
28068778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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