View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4457-Insertion-3 (Length: 709)
Name: NF4457-Insertion-3
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4457-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 82 - 707
Target Start/End: Complemental strand, 32866709 - 32866083
Alignment:
| Q |
82 |
catttttctcatgtaacataaaataaaacacagattcactgccccttctttccctatnnnnnnngaccgtaaacttcaccttcttaagcttttataagac |
181 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| ||||| |
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| T |
32866709 |
catttttctcatgtaacataaaataaaacacagattcactgccccttctttccctataaaaaaaaatcataaacttcaccttcttaagcttttagaagac |
32866610 |
T |
|
| Q |
182 |
gtgaagtctacaaggtttttagccagcaaaatcttaccctagttgtctagtaaatagtatgtacgtaccataatatgttgtgtcacaaatagacacaaaa |
281 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32866609 |
gtgaagactacaaggtttttagccagcaaaatcttatcctagttgtctagtaaatagtatgtacgtaccataatatgttgtgtcacaaatagacacaaaa |
32866510 |
T |
|
| Q |
282 |
gcgacatcaatattacacttgatccaaattttaggaggcttttcccgtata-tttatctcttataattgaatcaaaatgtgcttaggcaacatcacatca |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32866509 |
gcgacatcaatattacacttgatccaaattttaggaggctttttccgtatactttatctcttataattgaatcaaaatgtgcttaggcaacatcacatca |
32866410 |
T |
|
| Q |
381 |
ttttatgtgattagttttgtaaccttaagttattcagttgaaattcgcttaaaaatagctatgaaatgctgattaatgtcactttaattaacaaaataat |
480 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
32866409 |
ttttatgtgattagttttgtaaccttaagttattcagttgaaattcgcttaaatataactataaaatgatgattaatgtcactttaattaacaaaataat |
32866310 |
T |
|
| Q |
481 |
cccctctgtcccaattttttatttaaaaaagacatacattgaagggtccaaccaacactcgtttgatttgggcacaccataccctttacttggacctaaa |
580 |
Q |
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| T |
32866309 |
cccctctgtcccaattttttatttaaaaaagacacacattgaagggtccaaccaacactcgtttgatttgggcacaccataccctttacttggacctaaa |
32866210 |
T |
|
| Q |
581 |
tacaattgagtaaagtgattggcagaagaaattnnnnnnngaatgcaatttagtcttcaatttgacattcacacgtgactctaagaatggattaggtcgt |
680 |
Q |
| |
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|||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32866209 |
tacaattgagcaaagtgattggcagaaaaaattaaaaaaagaatgcaattcagtcttcaatttgacattcacacgtgactctaagaatggattaggtcgt |
32866110 |
T |
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| Q |
681 |
aaatcaaatgtgaatgatcatgatcga |
707 |
Q |
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| T |
32866109 |
aaatcaaatgtgaatgatcatgatcga |
32866083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 151 - 419
Target Start/End: Complemental strand, 32874970 - 32874696
Alignment:
| Q |
151 |
taaacttcaccttcttaagcttttataagacgtgaagtctacaaggtttttagccagcaaaatcttaccctagttgtctagtaaatagtatgtacgtacc |
250 |
Q |
| |
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||||||| | |||| |||||||||| ||||||| ||| ||||||| |||| |||||||||||||||| ||||||||||| ||||||| | || ||||| |
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| T |
32874970 |
taaactttatcttcataagcttttaaaagacgtcaagactacaagatttt-agccagcaaaatcttagcctagttgtcttgtaaata---tatatgtacc |
32874875 |
T |
|
| Q |
251 |
ataatatgttgtgt---------cacaaatagacacaaaagcgacatcaatattacacttgatccaaattttaggaggcttttcccgtata-tttatctc |
340 |
Q |
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|||||||||| ||| || ||||||||| ||||| ||||||||| ||||| ||||| ||| ||||||||||||||| | | ||| ||||| | |
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| T |
32874874 |
ataatatgttatgtatgttatgtcataaatagacataaaagtgacatcaatgttacatttgattcaatttttaggaggctttttctgcatactttatacc |
32874775 |
T |
|
| Q |
341 |
ttataattgaatcaaaatgtgcttaggcaacatcacatcattttatgtgattagttttgtaaccttaagttattcagtt |
419 |
Q |
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||||||||||||||||| | ||||| ||||| ||||| |||||||||| ||||| ||||||||||||| |||| |||| |
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| T |
32874774 |
ttataattgaatcaaaaggagcttacacaacaccacattattttatgtgcttagtgttgtaaccttaagatattgagtt |
32874696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 146 - 292
Target Start/End: Complemental strand, 32873079 - 32872933
Alignment:
| Q |
146 |
gaccgtaaacttcaccttcttaagcttttataagacgtgaagtctacaaggtttttagccagcaaaatcttaccctagttgtctagtaaata-gtatgta |
244 |
Q |
| |
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||||||||||||||||||| |||||||||| |||||||||| |||||||| ||||||| ||||||||| || |||||| |||| ||||||| || ||| |
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| T |
32873079 |
gaccgtaaacttcaccttcataagcttttagaagacgtgaaaactacaagg-ttttagcaagcaaaatcatagcctagtagtctggtaaatatatacgta |
32872981 |
T |
|
| Q |
245 |
cgtaccataatatgttgtgtcacaaatagacacaaaagcgacatcaat |
292 |
Q |
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|||||||||||||||| |||| |||||||||| |||||| | |||||| |
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| T |
32872980 |
cgtaccataatatgttatgtcgcaaatagacataaaagctatatcaat |
32872933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 32872854 - 32872785
Alignment:
| Q |
340 |
cttataattgaatcaaaatgtgcttaggcaacatcacatcattttatgtgattagttttgtaaccttaag |
409 |
Q |
| |
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|||||||||| ||||||||| |||| ||||| ||||| || ||||||| ||||| ||||||||||||| |
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| T |
32872854 |
cttataattgtatcaaaatgatcttacacaacaccacattatgttatgtgcttagtgttgtaaccttaag |
32872785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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