View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4457-Insertion-4 (Length: 643)
Name: NF4457-Insertion-4
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4457-Insertion-4 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 102 - 643
Target Start/End: Complemental strand, 26353091 - 26352547
Alignment:
| Q |
102 |
cgattataaaggcctcaccactacttttatgttctccaacatgtggtctcataatctaacaacataagcaataagctgcatcctctttttgactatattc |
201 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26353091 |
cgattataaaggcatcaccactacttttatgttctctaacatgtggtctgataaaataacaacataagcaataagctgcatcctctttttgactatattc |
26352992 |
T |
|
| Q |
202 |
cacccaacctctatatttcgaataccaatttgaattaaacttatgaaagacatcccaaactttatttagtggaaaattaatctcttttggtttataaaga |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
26352991 |
cacccaacctctatatttcgaataccaatccgaattaaacttatgaaagacatcccaaattttatttattggaaaattaatctcttttggtttacaaaga |
26352892 |
T |
|
| Q |
302 |
accttttgcaaatagtatcttctaattacttctctatcacatggatgataatttgaatt-ttttgccataaacaaggattattttgaagtttttccaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26352891 |
accttttgcaaatagtatcttctaattacttctctatcacttggatgataatttgaatttttttgccagaaacaaggattattttgaagcttttccaaat |
26352792 |
T |
|
| Q |
401 |
ccaattgcaaaaatctgtgttttttaaagatggacccaattttacgctttcacattcataactgtttcaggttgaggattagaggttgatgagtgttcta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26352791 |
ccaattgcaaaaatctgtgttttttaaagatggacccaattttatgctttcacattcataactgtttcaggttgaggattagaagttgacgagtgttctg |
26352692 |
T |
|
| Q |
501 |
accttga--nnnnnnnaattccattgcttattgctgggaatcaaataaaaataccgtagttaaaattttgttgataaattagcaaactaatatacaacaa |
598 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
26352691 |
accttgatttttttttaattccattgcttattgctgggaatcaaataaaaataccatagtgaaaaatttgttgataaattagcaaactaatatacaataa |
26352592 |
T |
|
| Q |
599 |
gcctaaataaatactataaaacattaataatgaagttttcacaat |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26352591 |
gcctaaataaatactataaaacattaataatggagttttcacaat |
26352547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 26353882 - 26353828
Alignment:
| Q |
7 |
atgtacaagaaaaacaagaagcaaaagagttttccagttcattttacccgttcta |
61 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26353882 |
atgtacaagaaaaataagaagcaaaagacttttccagttcattttacccgttcta |
26353828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 105 - 353
Target Start/End: Original strand, 49602131 - 49602379
Alignment:
| Q |
105 |
ttataaaggcctcaccactacttttatgttctccaacatgtggtctcataatctaacaacataagcaataagctgcatcctctttttgactatattccac |
204 |
Q |
| |
|
||||||||||||| ||||||| | |||||||| || ||||| |||||| | ||||||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
49602131 |
ttataaaggcctcgccactacctctatgttctttaagatgtgatctcatgagataacaacataagcaatatgctgcatcttccttttgactatattccaa |
49602230 |
T |
|
| Q |
205 |
ccaacctctatatttcgaataccaatttgaattaaacttatgaaagacatcccaaactttatttagtggaaaattaatctcttttggtttataaagaacc |
304 |
Q |
| |
|
|||||| | |||||| |||||||| | ||||||||||| || || ||| | || ||| | |||||||||||||||||| |||||| | |||| || |
|
|
| T |
49602231 |
ccaaccgccatattttgaataccattccaaattaaacttacgagaggaatctccaaattttgtaagtggaaaattaatctctcttggttgacaaaggccc |
49602330 |
T |
|
| Q |
305 |
ttttgcaaatagtatcttctaattacttctctatcacatggatgataat |
353 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
49602331 |
ttttgaaaatagtatctcctaattttctctctatcacttggatgataat |
49602379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 44111402 - 44111492
Alignment:
| Q |
269 |
agtggaaaattaatctcttttggtttataaagaaccttttgcaaatagtat-cttctaattacttctctatcacatggatgataatttgaa |
358 |
Q |
| |
|
|||||||||| |||||||||||| | |||| | | ||||| |||||| || ||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
44111402 |
agtggaaaatcaatctcttttggctgataagggcctttttgaaaatagcattcttctaatttcttctctatcacttggatgataatttgaa |
44111492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 105 - 353
Target Start/End: Complemental strand, 22971040 - 22970792
Alignment:
| Q |
105 |
ttataaaggcctcaccactacttttatgttctccaacatgtggtctcataatctaacaacataagcaataagctgcatcctctttttgactatattccac |
204 |
Q |
| |
|
||||||||||||| ||||||| | |||||||| || ||||| |||||| | ||||||||||||||||| | |||||| || |||||||||||||||| |
|
|
| T |
22971040 |
ttataaaggcctcgccactacctctatgttctttaagatgtgatctcatgagataacaacataagcaatatgatgcatcttccttttgactatattccaa |
22970941 |
T |
|
| Q |
205 |
ccaacctctatatttcgaataccaatttgaattaaacttatgaaagacatcccaaactttatttagtggaaaattaatctcttttggtttataaagaacc |
304 |
Q |
| |
|
|||||| | |||||| |||||||| | ||||||||||| || || ||| | || ||| |||||||||||||||||| |||||| | || | || |
|
|
| T |
22970940 |
ccaaccgccatattttgaataccattccaaattaaacttacgagaggaatctccaaattttgcaagtggaaaattaatctctcttggttgacaagggccc |
22970841 |
T |
|
| Q |
305 |
ttttgcaaatagtatcttctaattacttctctatcacatggatgataat |
353 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
22970840 |
ttttgaaaatagtatctcctaattttttctctatcacttggatgataat |
22970792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 105 - 353
Target Start/End: Original strand, 21879585 - 21879833
Alignment:
| Q |
105 |
ttataaaggcctcaccactacttttatgttctccaacatgtggtctcataatctaacaacataagcaataagctgcatcctctttttgactatattccac |
204 |
Q |
| |
|
||||||||||||| ||||||| | |||||||| || ||||| |||||| | ||||||||||||||||| | |||||| || |||||||||||||||| |
|
|
| T |
21879585 |
ttataaaggcctcgccactacctctatgttctttaagatgtgatctcatgagataacaacataagcaatatgatgcatcttccttttgactatattccaa |
21879684 |
T |
|
| Q |
205 |
ccaacctctatatttcgaataccaatttgaattaaacttatgaaagacatcccaaactttatttagtggaaaattaatctcttttggtttataaagaacc |
304 |
Q |
| |
|
|||||| | |||||| |||||||| | ||||||||||| || || ||| | || ||| |||||||||||||||||| |||||| | || | || |
|
|
| T |
21879685 |
ccaaccgccatattttgaataccattccaaattaaacttacgagaggaatctccaaattttgcaagtggaaaattaatctctcttggttgacaagggccc |
21879784 |
T |
|
| Q |
305 |
ttttgcaaatagtatcttctaattacttctctatcacatggatgataat |
353 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
21879785 |
ttttgaaaatagtatctcctaattttttctctatcacttggatgataat |
21879833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 129 - 353
Target Start/End: Original strand, 12586611 - 12586835
Alignment:
| Q |
129 |
tatgttctccaacatgtggtctcataatctaacaacataagcaataagctgcatcctctttttgactatattccacccaacctctatatttcgaatacca |
228 |
Q |
| |
|
|||||||| || ||||| |||||| | ||||||||||||||||| |||||||| || |||||||||||||||| |||||| | |||||| |||||||| |
|
|
| T |
12586611 |
tatgttctttaagatgtgatctcatgagataacaacataagcaatatgctgcatcttccttttgactatattccaaccaaccgccatattttgaatacca |
12586710 |
T |
|
| Q |
229 |
atttgaattaaacttatgaaagacatcccaaactttatttagtggaaaattaatctcttttggtttataaagaaccttttgcaaatagtatcttctaatt |
328 |
Q |
| |
|
| ||||||||||| | || ||| | || ||| | |||||||||||||||||| |||||| | || | ||||||| ||||||||||| |||||| |
|
|
| T |
12586711 |
ttccaaattaaacttactagaggaatctccaaattttgtaagtggaaaattaatctctcttggttgacaagggcccttttgaaaatagtatctcctaatt |
12586810 |
T |
|
| Q |
329 |
acttctctatcacatggatgataat |
353 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
12586811 |
ttttctctatcacttggatgataat |
12586835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 40564547 - 40564452
Alignment:
| Q |
105 |
ttataaaggcctcaccactacttttatgttctccaacatgtggtctcataatctaacaacataagcaataagctgcatcctctttttgactatatt |
200 |
Q |
| |
|
||||||||||| | ||||||| | ||||||||| |||||||| || ||| | ||||| ||||||||||| | |||||| || ||||||||||||| |
|
|
| T |
40564547 |
ttataaaggccccgccactacctctatgttctctaacatgtgatcacatgagataacatcataagcaatatgatgcatcttccttttgactatatt |
40564452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 40564384 - 40564299
Alignment:
| Q |
269 |
agtggaaaattaatctcttttggtttataaagaaccttttgcaaatagtatcttctaattact-tctctatcacatggatgataat |
353 |
Q |
| |
|
|||| ||||||||||||| |||||| | || || ||||||| ||||||||||| |||||| | ||||| |||| ||||||||||| |
|
|
| T |
40564384 |
agtgaaaaattaatctctcttggttgacaatgatccttttgaaaatagtatctcctaatttttctctctctcacttggatgataat |
40564299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 499
Target Start/End: Original strand, 12586901 - 12586981
Alignment:
| Q |
420 |
ttttttaaagatggacccaattttacgctttcacattcat-aactgtttcaggttgaggattagaggttgatgagtgttct |
499 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||||| || ||||| ||| | ||||||||| |||||||| |||||| |
|
|
| T |
12586901 |
tttttcaaaggtggacccaattgtatactttcacattcatcaagtgtttgaggattaggattagaagttgatgattgttct |
12586981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 35036739 - 35036648
Alignment:
| Q |
111 |
aggcctcaccactacttttatgttctccaacatgtggtctcataatctaacaacataagcaataagctgcatcctctttttgactatattcca |
203 |
Q |
| |
|
|||||||||||||||| | ||||| | |||||||| ||||||| |||||||||| |||||| | |||||| | |||||||||||||||| |
|
|
| T |
35036739 |
aggcctcaccactactat-atgttttgcaacatgtcaactcataaggtaacaacatatgcaatatgttgcatctttcttttgactatattcca |
35036648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University