View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4457-Insertion-5 (Length: 618)
Name: NF4457-Insertion-5
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4457-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 7 - 618
Target Start/End: Complemental strand, 36262355 - 36261744
Alignment:
| Q |
7 |
aaataaattcactgttaaacagggtatatgtagcagttgagcatacaatccccgaagataaattcttattaagctttcctgtgtcacaacaacagtataa |
106 |
Q |
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| T |
36262355 |
aaataaattcactgttaaacagggtatatgtagcagttgagcatacaatccccgaagataaattcttattaagctttcctgtgtcgcaacaacagtataa |
36262256 |
T |
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| Q |
107 |
tggacacaaataatggatcctctttatcaacattttcttgtaaactgtgctcaagcacacggtaaaaactgctggaaattaacaaaagataattacaggg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36262255 |
tggacacaaataatggatcctctttatcaacattttcttgtaaactgtgctcaagcacacggtaaaaactgctggaaattaacaaaagataattacaggg |
36262156 |
T |
|
| Q |
207 |
tatgagtctctcattaagagacaacaaaaagaaggggaaaatgccctcagttattcagtacatatcaaaattgtttctaagtagcttcaataaagaaaga |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36262155 |
tatgagtctctcattaagagacaacaaaaagaaggggaaaatgccctcagttattcagtacatatcaaaattgtttctaagtagcctcaataaagaaaga |
36262056 |
T |
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| Q |
307 |
acctcctcaaggggccatcagactctgaattgtgtaagcaaaagactttgcccagtcagctctaagcagcaatgtctgcagtgtctccatcacattatac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36262055 |
acctcctcaaggggccatcagactctgaattgtgtaagcaaaagactttgcccagtcagctctaagcagcaatgtctgcagtgtctccatcacattatac |
36261956 |
T |
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| Q |
407 |
ccgggatcaagcttgcgctgccaaccctacaaattatatattcaccgatgcatcaagtcagtcacaacagcaattaataattaccaatgtagatggtttg |
506 |
Q |
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| T |
36261955 |
ccgggatcaagcttgcgctgccaaccctacaaattatatattcaccgatgcatcaagtcagtcacaacagctattaataattaccaatgtagatggtttg |
36261856 |
T |
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| Q |
507 |
gtgcatgcgaaaagaaaacattctaaaatctaatttatgctttcggcctttcaccattattttccatgcatgccaatcacaaaataaacataaactctgt |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36261855 |
gtgcatgcgaaaagaaaacattctaaaatctaatttatgctttcggcctttcaccattattttccatgcatgccaatcacaaaataaacataaactctgt |
36261756 |
T |
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| Q |
607 |
tacagtagtaat |
618 |
Q |
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|||||| ||||| |
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| T |
36261755 |
tacagtggtaat |
36261744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 352 - 444
Target Start/End: Original strand, 2852502 - 2852594
Alignment:
| Q |
352 |
ctttgcccagtcagctctaagcagcaatgtctgcagtgtctccatcacattatacccgggatcaagcttgcgctgccaaccctacaaattata |
444 |
Q |
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||||||||| ||||||||||||||||| |||||||| |||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
2852502 |
ctttgcccaatcagctctaagcagcaaagtctgcagcgtctgcatcacatcgtacccaggatcaagctttcgctgccaaccctacaaattata |
2852594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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