View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4457-Insertion-7 (Length: 274)

Name: NF4457-Insertion-7
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4457-Insertion-7
NF4457-Insertion-7
[»] chr2 (1 HSPs)
chr2 (9-274)||(36338358-36338623)
[»] chr1 (4 HSPs)
chr1 (87-130)||(8445664-8445707)
chr1 (74-151)||(5039239-5039317)
chr1 (74-110)||(7639027-7639063)
chr1 (74-110)||(25956471-25956507)
[»] chr5 (1 HSPs)
chr5 (74-130)||(39124178-39124235)
[»] chr4 (1 HSPs)
chr4 (74-111)||(41273595-41273632)
[»] chr7 (1 HSPs)
chr7 (87-135)||(42898536-42898584)
[»] chr3 (2 HSPs)
chr3 (87-139)||(4816699-4816751)
chr3 (87-139)||(54383594-54383646)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 36338623 - 36338358
Alignment:
Q  9 ttttttctagcagtaactttccratataatattattgcaagataagattatatactctagtcaaatttttggcacatgtcaaagaccttccaacatctta 108  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  36338623 ttttttctagcagtaactttccaatataatattactgcaagataagattatatactttagtcaaatttttgacacatgtcaaagacctttcaacatctta 36338524  T
Q  109 atgtccatatttaagtcacaagtttgggttatcaaattcgacatatactttagttaaatagaaacttgaagcaaatagctagataggtgctatgattatt 208  Q
    |||||||||||||||||||||| ||| |||| |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36338523 atgtccatatttaagtcacaagcttgcgttaccaagctcggcatatactttagttaaatagaaacttgaagcaaatagctagataggtgctatgattatt 36338424  T
Q  209 aacattttggatactttatctatatatcgcagggacattttcataaactgtttgtaaataatttga 274  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||    
T  36338423 aacattttggatactttatctatatctcgcaggcaccttttcataaactgtttgtcaataatttga 36338358  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 8445707 - 8445664
Alignment:
Q  87 tcaaagaccttccaacatcttaatgtccatatttaagtcacaag 130  Q
    ||||||||||||||||||||||||| || |||||| ||||||||    
T  8445707 tcaaagaccttccaacatcttaatgcccctatttaggtcacaag 8445664  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 5039317 - 5039239
Alignment:
Q  74 tttttggcacatgtcaaag-accttccaacatcttaatgtccatatttaagtcacaagtttgggttatcaaattcgaca 151  Q
    ||||| |||||||| |||| ||||||||||||||||||| |  |||||| |||||||| |||  ||| |||||||||||    
T  5039317 tttttagcacatgttaaaggaccttccaacatcttaatggcactatttaggtcacaagcttgcattaccaaattcgaca 5039239  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 7639027 - 7639063
Alignment:
Q  74 tttttggcacatgtcaaagaccttccaacatcttaat 110  Q
    |||||||||||  ||||||||||||||||||||||||    
T  7639027 tttttggcacacatcaaagaccttccaacatcttaat 7639063  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 25956471 - 25956507
Alignment:
Q  74 tttttggcacatgtcaaagaccttccaacatcttaat 110  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  25956471 tttttggcacacgtcaaagatcttccaacatcttaat 25956507  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 39124235 - 39124178
Alignment:
Q  74 tttttggcacatgtcaaag-accttccaacatcttaatgtccatatttaagtcacaag 130  Q
    |||||||||||| |||||| |||||||||||| ||||||||| |||| || |||||||    
T  39124235 tttttggcacatatcaaaggaccttccaacattttaatgtccctattcaaatcacaag 39124178  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 41273595 - 41273632
Alignment:
Q  74 tttttggcacatgtcaaagaccttccaacatcttaatg 111  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  41273595 tttttggcacacgtcaaagaccttccaacattttaatg 41273632  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 42898584 - 42898536
Alignment:
Q  87 tcaaagaccttccaacatcttaatgtccatatttaagtcacaagtttgg 135  Q
    ||||||||||||||||||||||||| || || ||| |||||||| ||||    
T  42898584 tcaaagaccttccaacatcttaatgaccctacttaggtcacaagcttgg 42898536  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 4816751 - 4816699
Alignment:
Q  87 tcaaagaccttccaacatcttaatgtccatatttaagtcacaagtttgggtta 139  Q
    ||||||||||||||||||||||||| || || ||| |||||||| ||| ||||    
T  4816751 tcaaagaccttccaacatcttaatgcccctacttaggtcacaagcttgcgtta 4816699  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 54383646 - 54383594
Alignment:
Q  87 tcaaagaccttccaacatcttaatgtccatatttaagtcacaagtttgggtta 139  Q
    ||||||||||||||||||||||||| || || ||| |||||||| ||| ||||    
T  54383646 tcaaagaccttccaacatcttaatgcccctacttaggtcacaagcttgcgtta 54383594  T

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