View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4457_high_3 (Length: 319)

Name: NF4457_high_3
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4457_high_3
NF4457_high_3
[»] chr1 (4 HSPs)
chr1 (262-308)||(9685661-9685707)
chr1 (121-158)||(9685522-9685559)
chr1 (96-129)||(27895502-27895535)
chr1 (97-129)||(33799150-33799182)
[»] chr3 (2 HSPs)
chr3 (67-150)||(20358034-20358117)
chr3 (96-129)||(30187271-30187304)
[»] chr5 (4 HSPs)
chr5 (96-129)||(9064568-9064601)
chr5 (71-127)||(40789884-40789940)
chr5 (96-129)||(22099135-22099168)
chr5 (96-129)||(31293374-31293407)
[»] scaffold0385 (1 HSPs)
scaffold0385 (96-134)||(2798-2836)
[»] scaffold0015 (1 HSPs)
scaffold0015 (94-128)||(4855-4889)
[»] chr8 (2 HSPs)
chr8 (96-130)||(42747274-42747308)
chr8 (96-129)||(27420370-27420403)
[»] scaffold1951 (1 HSPs)
scaffold1951 (96-129)||(482-515)
[»] chr7 (5 HSPs)
chr7 (96-129)||(7282563-7282596)
chr7 (89-130)||(9600232-9600273)
chr7 (89-130)||(9827803-9827844)
chr7 (96-129)||(10427833-10427866)
chr7 (96-129)||(44521505-44521538)
[»] chr6 (2 HSPs)
chr6 (96-129)||(12336176-12336209)
chr6 (82-154)||(3415661-3415733)
[»] chr4 (4 HSPs)
chr4 (96-129)||(6453535-6453568)
chr4 (96-129)||(8683984-8684017)
chr4 (96-129)||(22197659-22197692)
chr4 (96-129)||(37113211-37113244)
[»] chr2 (2 HSPs)
chr2 (96-129)||(16238720-16238753)
chr2 (96-129)||(26311154-26311187)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 9685661 - 9685707
Alignment:
Q  262 ttctattgctctcacatgcaagtgtaatttttcttcatacctttctt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9685661 ttctattgctctcacatgcaagtgtaatttttcttcatacctttctt 9685707  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 9685522 - 9685559
Alignment:
Q  121 gatgaatcatttgtgttaatatattccattttagtttg 158  Q
    ||||||||| || |||||||||||||||||||||||||    
T  9685522 gatgaatcacttatgttaatatattccattttagtttg 9685559  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 27895502 - 27895535
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  27895502 attctcttttgcacaccttgtgcgagatgaatca 27895535  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 33799182 - 33799150
Alignment:
Q  97 ttctcttttgcacactttgtgcgagatgaatca 129  Q
    ||||||||||||||| |||||||||||||||||    
T  33799182 ttctcttttgcacaccttgtgcgagatgaatca 33799150  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 20358034 - 20358117
Alignment:
Q  67 agacttgacattataaattgttttggataattctcttttgcacactttgtgcgagatgaatcatttgtgttaatatattccatt 150  Q
    |||||||||||| ||| ||| ||||| | |||||||||||||||| || |  |||||||||||||| |||||||||||||||||    
T  20358034 agacttgacattgtaatttggtttgggtgattctcttttgcacaccttatatgagatgaatcatttttgttaatatattccatt 20358117  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 30187304 - 30187271
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  30187304 attctcttttgcacaccttgtgcgagatgaatca 30187271  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 9064601 - 9064568
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    ||||||||||||||||||||||||||||||||||    
T  9064601 attctcttttgcacactttgtgcgagatgaatca 9064568  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 40789884 - 40789940
Alignment:
Q  71 ttgacattataaattgttttggataattctcttttgcacactttgtgcgagatgaat 127  Q
    |||||||| ||||||||||||| |  || ||||||||||| ||||||||||||||||    
T  40789884 ttgacattgtaaattgttttgggtgtttgtcttttgcacattttgtgcgagatgaat 40789940  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 22099135 - 22099168
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  22099135 attctcttttgcacaccttgtgcgagatgaatca 22099168  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 31293407 - 31293374
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  31293407 attctcttttgcacacgttgtgcgagatgaatca 31293374  T

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Target: scaffold0385 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 2836 - 2798
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatcatttgt 134  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  2836 attctcttttgcacacattgtgcgagatgaatcacttgt 2798  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 4889 - 4855
Alignment:
Q  94 taattctcttttgcacactttgtgcgagatgaatc 128  Q
    |||||||||||||||||| ||||||||||||||||    
T  4889 taattctcttttgcacaccttgtgcgagatgaatc 4855  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 42747274 - 42747308
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatcat 130  Q
    |||||||||||||||| ||||||||||||||||||    
T  42747274 attctcttttgcacaccttgtgcgagatgaatcat 42747308  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 27420403 - 27420370
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  27420403 attctcttttgcacaccttgtgcgagatgaatca 27420370  T

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Target: scaffold1951 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 515 - 482
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  515 attctcttttgcacaccttgtgcgagatgaatca 482  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 7282596 - 7282563
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  7282596 attctcttttgcacaccttgtgcgagatgaatca 7282563  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 9600273 - 9600232
Alignment:
Q  89 ttggataattctcttttgcacactttgtgcgagatgaatcat 130  Q
    |||||| |||||||||||||||| |||| |||||||||||||    
T  9600273 ttggatgattctcttttgcacaccttgtacgagatgaatcat 9600232  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 9827844 - 9827803
Alignment:
Q  89 ttggataattctcttttgcacactttgtgcgagatgaatcat 130  Q
    |||||| |||||||||||||||| |||| |||||||||||||    
T  9827844 ttggatgattctcttttgcacaccttgtacgagatgaatcat 9827803  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 10427833 - 10427866
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  10427833 attctcttttgcacaccttgtgcgagatgaatca 10427866  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 44521538 - 44521505
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  44521538 attctcttttgcacaccttgtgcgagatgaatca 44521505  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 12336176 - 12336209
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  12336176 attctcttttgcacaccttgtgcgagatgaatca 12336209  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 3415661 - 3415733
Alignment:
Q  82 aattgttttggataattctcttttgcacactttgtgcgagatgaatcatttgtgttaatatattccattttag 154  Q
    ||||||||||| | |||||||| ||||| | |||||| |||||||| | || || ||||| ||||||||||||    
T  3415661 aattgttttgggtgattctcttatgcacgccttgtgcaagatgaattacttatgctaatagattccattttag 3415733  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 6453535 - 6453568
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  6453535 attctcttttgcacaccttgtgcgagatgaatca 6453568  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 8684017 - 8683984
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  8684017 attctcttttgcacaccttgtgcgagatgaatca 8683984  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 22197659 - 22197692
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  22197659 attctcttttgcacaccttgtgcgagatgaatca 22197692  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 37113211 - 37113244
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  37113211 attctcttttgcacaccttgtgcgagatgaatca 37113244  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 16238753 - 16238720
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  16238753 attctcttttgcacaccttgtgcgagatgaatca 16238720  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 26311154 - 26311187
Alignment:
Q  96 attctcttttgcacactttgtgcgagatgaatca 129  Q
    |||||||||||||||| |||||||||||||||||    
T  26311154 attctcttttgcacaccttgtgcgagatgaatca 26311187  T

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