View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4457_low_1 (Length: 678)

Name: NF4457_low_1
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4457_low_1
NF4457_low_1
[»] chr5 (3 HSPs)
chr5 (18-668)||(33559837-33560487)
chr5 (170-269)||(33560698-33560797)
chr5 (157-276)||(17059129-17059248)
[»] chr2 (60 HSPs)
chr2 (366-664)||(39391222-39391520)
chr2 (242-517)||(39220923-39221198)
chr2 (409-666)||(39161306-39161563)
chr2 (409-666)||(39207631-39207888)
chr2 (41-272)||(39389667-39389898)
chr2 (26-223)||(39390954-39391142)
chr2 (154-537)||(39450988-39451371)
chr2 (168-345)||(39193013-39193190)
chr2 (168-345)||(39198693-39198870)
chr2 (348-483)||(39220705-39220840)
chr2 (53-274)||(39390519-39390740)
chr2 (147-360)||(39398170-39398383)
chr2 (228-360)||(39467848-39467980)
chr2 (348-475)||(39198915-39199042)
chr2 (489-666)||(39199014-39199191)
chr2 (26-217)||(39136598-39136789)
chr2 (504-666)||(39220564-39220726)
chr2 (254-427)||(39602590-39602763)
chr2 (262-333)||(39391160-39391231)
chr2 (49-192)||(39221164-39221298)
chr2 (114-276)||(38792872-38793034)
chr2 (257-345)||(39398616-39398704)
chr2 (253-314)||(39192888-39192949)
chr2 (253-314)||(39198568-39198629)
chr2 (295-360)||(39220870-39220935)
chr2 (127-210)||(39222292-39222375)
chr2 (168-345)||(39467527-39467704)
chr2 (47-179)||(39390303-39390435)
chr2 (156-276)||(39415559-39415679)
chr2 (228-307)||(39221691-39221770)
chr2 (228-307)||(39390148-39390227)
chr2 (228-307)||(39390568-39390647)
chr2 (236-314)||(39136879-39136957)
chr2 (228-314)||(39415121-39415207)
chr2 (43-193)||(39415950-39416100)
chr2 (48-274)||(39602869-39603095)
chr2 (113-202)||(39221670-39221759)
chr2 (242-307)||(39390792-39390857)
chr2 (132-277)||(39451374-39451519)
chr2 (142-202)||(39415161-39415221)
chr2 (159-210)||(39221872-39221923)
chr2 (159-210)||(39222082-39222133)
chr2 (114-224)||(38792672-38792782)
chr2 (80-202)||(39192841-39192963)
chr2 (80-202)||(39198521-39198643)
chr2 (228-305)||(39390358-39390435)
chr2 (138-223)||(39415283-39415368)
chr2 (253-314)||(39415530-39415591)
chr2 (113-190)||(39415768-39415845)
chr2 (47-271)||(39451632-39451856)
chr2 (116-190)||(39136877-39136951)
chr2 (115-192)||(39390791-39390868)
chr2 (253-314)||(39415782-39415843)
chr2 (153-202)||(39422180-39422229)
chr2 (502-579)||(39602480-39602557)
chr2 (228-276)||(39137043-39137091)
chr2 (256-304)||(39137300-39137348)
chr2 (114-178)||(39220758-39220822)
chr2 (241-277)||(39458496-39458532)
chr2 (173-217)||(39458568-39458612)
[»] chr7 (3 HSPs)
chr7 (23-217)||(19806959-19807153)
chr7 (232-314)||(19807240-19807322)
chr7 (116-190)||(19807238-19807312)
[»] chr3 (2 HSPs)
chr3 (254-306)||(51575155-51575207)
chr3 (249-287)||(51574591-51574629)


Alignment Details
Target: chr5 (Bit Score: 611; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Complemental strand, 33560487 - 33559837
Alignment:
Q  18 tcttgaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagcctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33560487 tcttgaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagcctt 33560388  T
Q  118 caaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33560387 caaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttctcaatgctcctgttt 33560288  T
Q  218 caatacatggtccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccatt 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33560287 caatacatgctccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccatt 33560188  T
Q  318 gctcgtccttcaagttgcatctcttttgtgtcaagctcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagct 417  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  33560187 gctcatccttcaagttgaatctcttttgtgtcaagctcattcatacgaccttcaagttccttctcctttgactcaaattccttcatacagtcttcaagct 33560088  T
Q  418 gcttctctctcaaatccagcttctttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctcttttgactc 517  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33560087 gcttctctctcgaatccagcttctttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctcttttgactc 33559988  T
Q  518 aagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttc 617  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33559987 aagttccttaacccaacctttaaattgcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttc 33559888  T
Q  618 ttctttgcagactctaatttctccgcttcttcaccaactaatttgttcatc 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33559887 ttctttgcagactctaatttctccgcttcttcaccaactaatttgttcatc 33559837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 33560797 - 33560698
Alignment:
Q  170 ctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaaac 269  Q
    |||||||||||  ||||||||||||||| |||||  ||||| ||||||  |||    |||| ||||||||  |||||| |||||||||||||||||||||    
T  33560797 ctcttttgactcgagctccttcatttggttttcgacatgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaac 33560698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 17059248 - 17059129
Alignment:
Q  157 cttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctc 256  Q
    ||||| |||| |||||||||||   ||||||||||||| |||||||| ||||||  ||  |  ||||    ||||||| |||| ||||||| ||||||||    
T  17059248 cttcatgttgtttctcttttgatgcaagctccttcattcggctttcgaaatgcttatgaattgataccaaatccttcacttggatttcaaattccttctc 17059149  T
Q  257 ttttgattcaaactccttca 276  Q
    || ||||||||||| |||||    
T  17059148 ttgtgattcaaacttcttca 17059129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 60)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 366 - 664
Target Start/End: Original strand, 39391222 - 39391520
Alignment:
Q  366 ccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttctttacccattcttcatagtgtttct 465  Q
    |||||||||||||| |||||||| |||||||| || | || | ||||||| | |||||||||  | ||||||| ||| |||| ||| ||| |||| ||||    
T  39391222 ccttcaagttccttttcctttgattcaaattctttcacacggacttcaaggtccttctctcttgactccagctccttaacccgttcctcaaagtgcttct 39391321  T
Q  466 cctttgactcaagctcctccacgcgttcttgacacagcttctcttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattc 565  Q
    ||||||||| |||||||||||| ||| ||| |||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||    
T  39391322 cctttgactgaagctcctccactcgtccttcacactgcttctcttttgactcaagttccttaacccggcctttaaattgcttctgctttgactcaaagtc 39391421  T
Q  566 cttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatttgtt 664  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| || ||||||||||||| |||||||||    
T  39391422 cttcattagagcacagctattcttcatttctgatattatatttatcgatttcttctttgtagactctaatttttctgcttcttcaccaattaatttgtt 39391520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 242 - 517
Target Start/End: Complemental strand, 39221198 - 39220923
Alignment:
Q  242 ttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctct 341  Q
    |||||| ||||||| ||||||||||||||||||||||| | |||||  ||||| |||||||||||||||||| |||||||||||||||| |||| |||||    
T  39221198 ttcaaattccttctgttttgattcaaactccttcacccagacttcacattgcacctcttttgactctagctctattgctcgtccttcaacttgcttctct 39221099  T
Q  342 tttgtgtcaagctcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttct 441  Q
    ||| | ||||||||||||||||||||||||| ||||||||| ||| | |||||||| || | || | | |||||||||||||||||  | ||||||||||    
T  39221098 tttttatcaagctcattcatacgaccttcaatttccttctcgtttaattcaaattctttcaaacggacatcaagctgcttctctcttgactccagcttct 39220999  T
Q  442 ttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctcttttgactc 517  Q
    || ||||||||||| |||| ||||||||||||| |||||||||  | ||| ||| || | ||||||||||||||||    
T  39220998 ttgcccattcttcaaagtgcttctcctttgactgaagctcctctgctcgtccttcactccgcttctcttttgactc 39220923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 409 - 666
Target Start/End: Complemental strand, 39161563 - 39161306
Alignment:
Q  409 cttcaagctgcttctctctcaaatccagcttctttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctc 508  Q
    |||||||||||||||||||  | ||||||| | |||||| ||| ||| |||| ||||||||||||| |||||||||||| ||| ||| | || |||||||    
T  39161563 cttcaagctgcttctctcttgactccagctccgttacccgttcctcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctc 39161464  T
Q  509 ttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgatattatatgc 608  Q
    ||||||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  39161463 ttttgactcaagttccttaacccggactttaaattgcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgatattatattt 39161364  T
Q  609 atcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatttgttca 666  Q
    || || |||||| |||  ||||||||| | || | |||||||| || |||||||||||    
T  39161363 attgacttcttccttgttgactctaatatttctgtttcttcactaattaatttgttca 39161306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 409 - 666
Target Start/End: Original strand, 39207631 - 39207888
Alignment:
Q  409 cttcaagctgcttctctctcaaatccagcttctttacccattcttcatagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctc 508  Q
    |||||||||||||||||||  | ||||||| | |||||| ||| ||| |||| ||||||||||||| |||||||||||| ||| ||| | || |||||||    
T  39207631 cttcaagctgcttctctcttgactccagctccgttacccgttcctcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctc 39207730  T
Q  509 ttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgatattatatgc 608  Q
    ||||||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  39207731 ttttgactcaagttccttaacccggactttaaattgcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgatattatattt 39207830  T
Q  609 atcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatttgttca 666  Q
    || || |||||| |||  ||||||||| | || | |||||||| || |||||||||||    
T  39207831 attgacttcttccttgttgactctaatatttctgtttcttcactaattaatttgttca 39207888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 39389667 - 39389898
Alignment:
Q  41 cctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactca 140  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||  |||| |||||| ||||||| |    ||||||||||||||||||||||| |||    
T  39389667 cctcaattttgatttgagctccaccatcatgctttcgaaatgcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattca 39389766  T
Q  141 tgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggt 240  Q
    ||||| | |||| || |||||||||||||| ||||||||| ||||||||||||||||||||   |||||| |||||||||||| || |||| |||||||     
T  39389767 tgctcctgcaattggtcttcaagttgcttcccttttgactcaagctccttcatttggcttttataatgcttctgtttcaatacctgctcctccatttggc 39389866  T
Q  241 tttcaaaatccttctcttttgattcaaactcc 272  Q
     ||||||  || ||||||||||||||||||||    
T  39389867 attcaaatcccctctcttttgattcaaactcc 39389898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 39390954 - 39391142
Alignment:
Q  26 ttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattcc 125  Q
    |||||||||||| ||||||| | |||||||||||||||||| ||||| |||||||||||||  |||| ||||||         ||| |||||||||||||    
T  39390954 ttgttctttcaaagacctcattcttgatttgagctcctccatcatgccttcgaaatgcttctttttagattcca---------cacggccttcaaattcc 39391044  T
Q  126 ttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatac 223  Q
    ||||||||| | |||||||| |||||| ||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||| ||| ||||||||    
T  39391045 ttctcctttaattcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttcatttggctttcacaatgcttctgcttcaatac 39391142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 154 - 537
Target Start/End: Complemental strand, 39451371 - 39450988
Alignment:
Q  154 ggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatcctt 253  Q
    ||||| ||||||| || ||| ||||||| | | |||||| |||||||||  | ||||||| ||| ||| |  | ||||| ||||||  |||||  | ||     
T  39451371 ggcctacaagttggttttctattgactgcaacaccttcaattggctttcaaagtgctcctttttaaattccagctccttgatttggccttcaactttctc 39451272  T
Q  254 ctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttgtgtcaagc 353  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| |||||||| |||||||||| | |||| ||||| | || |||||||||  |||||     
T  39451271 ctcttttgattcaaactccttcttccggccttcaagttgcatcttttttgactttagctccatttcccgtcgttcaactagcttctcttttgattcaaga 39451172  T
Q  354 tcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttctttacccattctt 453  Q
    || |||  ||||||||||||||||| |  |||||| ||||| ||  | ||| |  |||||||||||||||||||  |   || || |||||||| | |||    
T  39451171 tccttcgaacgaccttcaagttcctccatctttgattcaaactccctcatatatccttcaagctgcttctctcttgacatcaactcctttacccgtactt 39451072  T
Q  454 catagtgtttctcctttgactcaagctcctccacgcgttcttgacacagcttctcttttgactcaagttctttaacccgacctt 537  Q
    || |  | ||||||||||||||||| |||||||  ||| ||| |||  |||||||||||||||||||||| |||||| ||||||    
T  39451071 caaaacgcttctcctttgactcaaggtcctccagccgtccttcacattgcttctcttttgactcaagttccttaacctgacctt 39450988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 168 - 345
Target Start/End: Original strand, 39193013 - 39193190
Alignment:
Q  168 ttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaa 267  Q
    ||||||||| | | ||| ||||||||  || ||||| |||||||||||||  ||||   |||| ||||||||  |||||| |||||||||||||||||||    
T  39193013 ttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgataccgagtccgtcatttggcattcaaattccttctcttttgattcaa 39193112  T
Q  268 actccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttg 345  Q
    ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||  ||||||||| |||| ||| |||||    
T  39193113 acttcttcacccgaccttcatgttgcatctcttttaactctagctccattgcctgtccttcaacttgcttcttttttg 39193190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 168 - 345
Target Start/End: Original strand, 39198693 - 39198870
Alignment:
Q  168 ttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaa 267  Q
    ||||||||| | | ||| ||||||||  || ||||| |||||||||||||  ||||   |||| ||||||||  |||||| |||||||||||||||||||    
T  39198693 ttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgataccgagtccgtcatttggcattcaaattccttctcttttgattcaa 39198792  T
Q  268 actccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttg 345  Q
    ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||  ||||||||| |||| ||| |||||    
T  39198793 acttcttcacccgaccttcatgttgcatctcttttaactctagctccattgcctgtccttcaacttgcttcttttttg 39198870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 348 - 483
Target Start/End: Complemental strand, 39220840 - 39220705
Alignment:
Q  348 tcaagctcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttctttaccc 447  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | || | |||||||||||||||||||  ||||||||||  ||||||    
T  39220840 tcaagctcattcatacgaccttcaagttccttctcctttgattcagattcattcacacggccttcaagctgcttctctcttgaatccagctttgttaccc 39220741  T
Q  448 attcttcatagtgtttctcctttgactcaagctcct 483  Q
    |||||||| | | |||||| ||||||||||| ||||    
T  39220740 attcttcacactttttctcttttgactcaagttcct 39220705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 53 - 274
Target Start/End: Original strand, 39390519 - 39390740
Alignment:
Q  53 tttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatgctcattcaat 152  Q
    |||||||||||||||   |||||| |||||||||  |||| ||||||  |||||||    ||||||||||||  |||| ||||| |||||||| |||| |    
T  39390519 tttgagctcctccacttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcact 39390618  T
Q  153 cggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatcct 252  Q
    |||| |||| |||||||||||||||||| || ||||||||||||||||||  |||||| ||||||  |||     ||| ||||||||  |||||| ||||    
T  39390619 cggctttcatgttgcttctcttttgactcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatccatcatttggcattcaaattcct 39390718  T
Q  253 tctcttttgattcaaactcctt 274  Q
    ||||||||||||||||||||||    
T  39390719 tctcttttgattcaaactcctt 39390740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 147 - 360
Target Start/End: Original strand, 39398170 - 39398383
Alignment:
Q  147 ttcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaa 246  Q
    |||| ||| ||| ||||||| |||||||||||||  | |||||||| |||||||||  | ||||    ||| ||| |  | |||||||| |||  |||||    
T  39398170 ttcactcgtcctacaagttggttctcttttgactctaactccttcaattggctttcaaagtgctgtattttaaattcccgctccttcatctggccttcaa 39398269  T
Q  247 aatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttgt 346  Q
    | | || ||||||||| ||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||| |||||     
T  39398270 atttctcctcttttgactcaaactccttcttccggccttcaagttgcatctcttttgactctagctccattgctcgtccttcaacttccttcttttttga 39398369  T
Q  347 gtcaagctcattca 360  Q
     |||||||| ||||    
T  39398370 ttcaagctcgttca 39398383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 228 - 360
Target Start/End: Complemental strand, 39467980 - 39467848
Alignment:
Q  228 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtcctt 327  Q
    |||||||| |||  |||||| | || ||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  39467980 tccttcatctggccttcaaatttctcctcttttgattcaaactccttcttccggccttcaagctgcatctcttttgactctagctccattgcccgtcctt 39467881  T
Q  328 caagttgcatctcttttgtgtcaagctcattca 360  Q
    ||| |||| ||| |||||  |||||||| ||||    
T  39467880 caacttgcttcttttttgattcaagctccttca 39467848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 348 - 475
Target Start/End: Original strand, 39198915 - 39199042
Alignment:
Q  348 tcaagctcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctctcaaatccagcttctttaccc 447  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||| || | || | |||||||||||||||||||| |||||||||||| | |||    
T  39198915 tcaagctcattcatatgaccttcaatttccttctcctttgattcaaattccttcaaacggccttcaagctgcttctctctcgaatccagcttctgtgccc 39199014  T
Q  448 attcttcatagtgtttctcctttgactc 475  Q
     ||||||| | || ||||| ||||||||    
T  39199015 gttcttcacactgcttctcttttgactc 39199042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 489 - 666
Target Start/End: Original strand, 39199014 - 39199191
Alignment:
Q  489 cgttcttgacacagcttctcttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcacagctattct 588  Q
    ||||||| |||| |||||||||||||||| | ||| ||||||||| | | ||||  |||||||||||| ||||||||||||| | |||||   |||||||    
T  39199014 cgttcttcacactgcttctcttttgactcgatttccttaacccgatcatcaaatcgcttctgctttgattcaaattccttcacttgagcaatactattct 39199113  T
Q  589 tcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatttgttca 666  Q
    ||||||||||||||||||  | ||  |||||| || |||| ||||| || ||||| | |||||||| |||||||||||    
T  39199114 tcatttctgatattatatttagcgccttcttccttccagattctaacttttccgcctgttcaccaattaatttgttca 39199191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 39136789 - 39136598
Alignment:
Q  26 ttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattcc 125  Q
    |||| ||||||| | | |||||||||  |||| ||||||||||  ||||| ||||||| || ||||| |||||| ||| ||||  | ||||||||||||     
T  39136789 ttgtcctttcaatggcatcaattttgcattgatctcctccacctcgcttttgaaatgcctctctttagattccagctcattcatccggccttcaaattct 39136690  T
Q  126 ttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgttt 217  Q
    || || |   | |||||||| ||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||| |||||| ||||||    
T  39136689 ttttcttccaattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttt 39136598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 504 - 666
Target Start/End: Complemental strand, 39220726 - 39220564
Alignment:
Q  504 ttctcttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcacagctattcttcatttctgatatta 603  Q
    |||||||||||||||||||| |||| |||| | | ||||  |||||||||||||||||||||||||||  |||||   ||||||||||||||||||||||    
T  39220726 ttctcttttgactcaagttccttaaaccgatcatcaaatcgcttctgctttgactcaaattccttcatctgagcaatactattcttcatttctgatatta 39220627  T
Q  604 tatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatttgttca 666  Q
    |||   | |  |||||| || |||| ||||| || || |||| |||||||| |||||||||||    
T  39220626 tatttcttgccttcttcctttcagattctaacttttctgcttgttcaccaattaatttgttca 39220564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 254 - 427
Target Start/End: Complemental strand, 39602763 - 39602590
Alignment:
Q  254 ctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttgtgtcaagc 353  Q
    ||||||| ||| |||||||||| |||||||||||  |||||| |||||| ||| |||||||||||| |||||||||| |||| |||||||||  ||||||    
T  39602763 ctcttttaatttaaactccttctcccggccttcaaattgcatttcttttaactttagctccattgcccgtccttcaacttgcttctcttttgattcaagc 39602664  T
Q  354 tcattcatacgaccttcaagttccttctcctttgactcaaattcatttatacagtcttcaagctgcttctctct 427  Q
    |   || |||||||||||||||||| |  ||| || ||||| || || |||    |||||||||||||||||||    
T  39602663 tgcgtcgtacgaccttcaagttcctgcatcttagattcaaactccttcatatgtccttcaagctgcttctctct 39602590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 39391160 - 39391231
Alignment:
Q  262 attcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagtt 333  Q
    ||||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  39391160 attcaaattccttcacccgaccttcatgttgcatcttttttgtctctagctccattgctcgtccttcaagtt 39391231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 39221298 - 39221164
Alignment:
Q  49 ttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatgctcatt 148  Q
    |||||||||||||||||| |||||||||||||||||||  |||| ||||||         ||| |||||||| ||||||||||||||| |||||||| ||    
T  39221298 ttgatttgagctcctccatcatgctttcgaaatgcttctttttagattcca---------cacggccttcaagttccttctcctttgattcatgctcctt 39221208  T
Q  149 caatcggccttcaagttgcttctcttttgactgaagctccttca 192  Q
    |||||| ||||||| || ||||| |||||| | || ||||||||    
T  39221207 caatcgaccttcaaattccttctgttttgattcaaactccttca 39221164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 114 - 276
Target Start/End: Complemental strand, 38793034 - 38792872
Alignment:
Q  114 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcct 213  Q
    |||||||||||   || |||||| |||||||| ||||  ||| |||||  ||| ||||||||  ||| ||| |||||||||||||||||| |||||| ||    
T  38793034 ccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttct 38792935  T
Q  214 gtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaaactccttca 276  Q
    ||||||||||  | |||||||||||| |||| || ||  ||||| |||| |||||||||||||    
T  38792934 gtttcaataccagctccttcatttggctttcgaattctctctctattgactcaaactccttca 38792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 39398616 - 39398704
Alignment:
Q  257 ttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttg 345  Q
    |||||||| |||||| ||| ||||| ||||| |||||||||||||||| | |||||||||||| |||||||||| |||| |||||||||    
T  39398616 ttttgatttaaactcattctcccggacttcaagttgcatctcttttgagtttagctccattgcccgtccttcaacttgcttctcttttg 39398704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 39192888 - 39192949
Alignment:
Q  253 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 314  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||    
T  39192888 tctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctcc 39192949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 39198568 - 39198629
Alignment:
Q  253 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 314  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||    
T  39198568 tctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctcc 39198629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 39220935 - 39220870
Alignment:
Q  295 tctcttttgactctagctccattgctcgtccttcaagttgcatctcttttgtgtcaagctcattca 360  Q
    |||||||||||||||||||||||||||||||||||| |||| | |||||||| |||||||| ||||    
T  39220935 tctcttttgactctagctccattgctcgtccttcaacttgcttttcttttgtatcaagctccttca 39220870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 39222375 - 39222292
Alignment:
Q  127 tctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgct 210  Q
    |||| ||||| | |||||| |||| | |||||||||||||||||||||| |||| || ||||||||||||||||||| ||||||    
T  39222375 tctcttttgatttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgct 39222292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 345
Target Start/End: Complemental strand, 39467704 - 39467527
Alignment:
Q  168 ttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttctcttttgattcaa 267  Q
    ||||| |||||||  | |||||||| | |||||||  |||||| ||||||  ||||| | ||||||  ||||  |||||| | || |  |||||||| ||    
T  39467704 ttctcctttgactctaactccttcaatcggctttcaaaatgcttctgttttgatacaagctccttctcttggccttcaaatttctccagttttgatttaa 39467605  T
Q  268 actccttcacccggccttcatgttgcatctcttttgactctagctccattgctcgtccttcaagttgcatctcttttg 345  Q
    |||| ||| ||||| ||||| |||||||||||||||| | |||||||||||| | |||||||| |||| ||| |||||    
T  39467604 actcattctcccggacttcaagttgcatctcttttgagtttagctccattgcccttccttcaacttgcttctgttttg 39467527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 39390303 - 39390435
Alignment:
Q  47 ttttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatgctca 146  Q
    ||||| |||||||||||||||   |||||| |||||||||  |||| ||||||  |||||||    ||||||||||||  |||| |||||  |||||||     
T  39390303 ttttgttttgagctcctccacttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgatccatgctcc 39390402  T
Q  147 ttcaatcggccttcaagttgcttctcttttgac 179  Q
    |||| ||||| |||| |||||||||||||||||    
T  39390403 ttcactcggctttcatgttgcttctcttttgac 39390435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 39415559 - 39415679
Alignment:
Q  156 ccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaaatccttct 255  Q
    |||||| ||||||||||||||| || |||||||||||||   |||| | |||||| ||||||  || |  | ||||||||||||  |||||| ||| |||    
T  39415559 ccttcatgttgcttctcttttgcctcaagctccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctct 39415658  T
Q  256 cttttgattcaaactccttca 276  Q
    ||||||||| |||||||||||    
T  39415659 cttttgatttaaactccttca 39415679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 39221770 - 39221691
Alignment:
Q  228 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 307  Q
    ||||||||||||  |||||| ||  ||||||||||| ||  ||||||||||| ||||||||||||| |||||||||||||    
T  39221770 tccttcatttggccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactc 39221691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 39390148 - 39390227
Alignment:
Q  228 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 307  Q
    ||||||||||||  |||||||||  ||||||| ||||||  ||||||||| |||| |||||||||| |||||||||||||    
T  39390148 tccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactc 39390227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 39390568 - 39390647
Alignment:
Q  228 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 307  Q
    ||||||||||||  |||||| ||  ||||||||||||||  ||||||||| |||| |||||||||| |||||||||||||    
T  39390568 tccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactc 39390647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 39136957 - 39136879
Alignment:
Q  236 ttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 314  Q
    |||| ||||||| ||  ||||||||||| ||  ||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  39136957 ttggctttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctcc 39136879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 39415121 - 39415207
Alignment:
Q  228 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 314  Q
    ||||||| |||| |||| |||| ||||| || |||||| | ||||||||| || |||||||||||| ||||||||||||| ||||||    
T  39415121 tccttcagttggctttcgaaatgcttcttttctgattccagctccttcactcgaccttcatgttgcttctcttttgactcaagctcc 39415207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 39415950 - 39416100
Alignment:
Q  43 tcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatg 142  Q
    |||||||||  |||||||||||||||  | | | ||||| | || ||||| |||||| ||| ||||| | | |||||||||| || || |  || |||||    
T  39415950 tcaattttgtattgagctcctccacccagttattgaaatacctctctttagattccagctcattcactcggtcttcaaattctttttcttcggattcatg 39416049  T
Q  143 ctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcat 193  Q
    ||| |||||| ||||| ||||||||||||| || |||| ||||||||||||    
T  39416050 ctccttcaattggcctccaagttgcttctcattagactcaagctccttcat 39416100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 274
Target Start/End: Complemental strand, 39603095 - 39602869
Alignment:
Q  48 tttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatgctcat 147  Q
    |||||| |||||||||||||   |||||| |||||||||  |||| |||||| |||| ||||   ||||||||| ||  | || ||||| |||||||| |    
T  39603095 tttgatgtgagctcctccacatggctttcaaaatgcttctttttagattccagctccgtcacttggccttcaaactctctttcttttgattcatgctcct 39602996  T
Q  148 tcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaaa 247  Q
    |||| || | |||| ||| |||||||| |||||  |||| ||| ||  |||||||| |||| |  ||||| ||||     |||||| |||||  ||||||    
T  39602995 tcaaccgactttcatgtttcttctcttctgactcgagcttctttatccggctttcgaaatgtttttgttttaatatcaactccttcttttggaattcaaa 39602896  T
Q  248 atccttctcttttgattcaaactcctt 274  Q
     ||||||| ||||||||||||||||||    
T  39602895 ttccttctgttttgattcaaactcctt 39602869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 39221759 - 39221670
Alignment:
Q  113 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttc 202  Q
    ||||||||||||  |||| |||||  ||||||| ||||  | ||||||| |||||||||||||||||| || ||||||||| ||||||||    
T  39221759 gccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttcatctggctttc 39221670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 39390792 - 39390857
Alignment:
Q  242 ttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 307  Q
    |||||| ||||||| |||||||||||| |||||||| ||||||||| ||||  |||||||||||||    
T  39390792 ttcaaattccttcttttttgattcaaattccttcactcggccttcaagttgactctcttttgactc 39390857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 277
Target Start/End: Complemental strand, 39451519 - 39451374
Alignment:
Q  132 tttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtcct 231  Q
    ||||| |||||||| ||||| |||| ||||||||||||||| ||||| | ||| |||| |||  |||||||  |||| | |||||| ||| |    ||||    
T  39451519 tttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcctccatccggctttcataatgtttctgttttaattccaactcct 39451420  T
Q  232 tcatttggttttcaaaatccttctcttttgattcaaactccttcac 277  Q
    |||||||  ||||||| || || ||||||| |||||||||||||||    
T  39451419 tcatttgactttcaaactctttttcttttgtttcaaactccttcac 39451374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 39415161 - 39415221
Alignment:
Q  142 gctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttc 202  Q
    |||| |||| ||| |||||| |||||||||||||||||| ||||||||||||| |||||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggctttc 39415221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 39221923 - 39221872
Alignment:
Q  159 tcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgct 210  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| ||||||    
T  39221923 tcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgct 39221872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 39222133 - 39222082
Alignment:
Q  159 tcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgct 210  Q
    ||||||||||||||||| |||| || ||||||||||||||||||| ||||||    
T  39222133 tcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgct 39222082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 38792782 - 38792672
Alignment:
Q  114 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcct 213  Q
    |||||||||||  |||| ||||| || ||||| ||||  |||||||||  |||||| ||||| |||| ||| ||||||||| || ||||| || ||| ||    
T  38792782 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcgaaaagcttct 38792683  T
Q  214 gtttcaataca 224  Q
    |||||||||||    
T  38792682 gtttcaataca 38792672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 39192841 - 39192963
Alignment:
Q  80 atgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgac 179  Q
    |||||||  |||| |||||| ||||| ||| | |||||| |||||| |||| ||||| |||  ||  ||||  || |||||| ||||| |||| ||||||    
T  39192841 atgcttccttttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgac 39192940  T
Q  180 tgaagctccttcatttggctttc 202  Q
    | |||||||||||||||||||||    
T  39192941 tcaagctccttcatttggctttc 39192963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 39198521 - 39198643
Alignment:
Q  80 atgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgac 179  Q
    |||||||  |||| |||||| ||||| ||| | |||||| |||||| |||| ||||| |||  ||  ||||  || |||||| ||||| |||| ||||||    
T  39198521 atgcttccttttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgac 39198620  T
Q  180 tgaagctccttcatttggctttc 202  Q
    | |||||||||||||||||||||    
T  39198621 tcaagctccttcatttggctttc 39198643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 39390358 - 39390435
Alignment:
Q  228 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgac 305  Q
    ||||||||||||  |||||| ||  ||||||||||| ||  ||||||||| |||| |||||||||| |||||||||||    
T  39390358 tccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctcttttgac 39390435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 39415283 - 39415368
Alignment:
Q  138 tcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatac 223  Q
    |||||||| ||||||||| |||||  ||||||  |||| |||| |||||| |||| |||||||||  |||||| ||||||||||||    
T  39415283 tcatgctccttcaatcggacttcatcttgctttgctttcgactcaagctctttcacttggctttctaaatgcttctgtttcaatac 39415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 39415530 - 39415591
Alignment:
Q  253 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 314  Q
    |||||||||||||| ||||||||||  | |||||||||||| ||||||||| ||| ||||||    
T  39415530 tctcttttgattcacactccttcacttgaccttcatgttgcttctcttttgcctcaagctcc 39415591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 39415768 - 39415845
Alignment:
Q  113 gccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctcctt 190  Q
    ||||||||||||  |||| |||||  ||||||||||||  ||||||||| | |||||||||||||| | |||||||||    
T  39415768 gccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcctt 39415845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 271
Target Start/End: Complemental strand, 39451856 - 39451632
Alignment:
Q  47 ttttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaattccttctcctttgactcatgctca 146  Q
    |||||||||||||||||||||   |||||| |||||||||  |||| ||||||  ||||||||   ||||||||||||  || | ||||| ||||||||     
T  39451856 ttttgatttgagctcctccacttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgattcatgctcc 39451757  T
Q  147 ttcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgtttcaatacatggtccttcatttggttttcaa 246  Q
     |||  ||||| ||| ||||| |||| ||| | | ||| |||| |||  |||||||  |||| | ||||||  ||||  ||||||||| ||||  |||||    
T  39451756 atcacccggccctcatgttgcctctcatttaagtcaaggtcctccatccggctttcataatgtttctgtttagatactaggtccttcagttggccttcaa 39451657  T
Q  247 aatccttctcttttgattcaaactc 271  Q
      ||||| | |||| ||||||||||    
T  39451656 tctccttttttttttattcaaactc 39451632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 39136951 - 39136877
Alignment:
Q  116 ttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctcctt 190  Q
    |||||||||  |||| |||||  ||||||| ||||  ||||||||| | |||||||||||||||| |||||||||    
T  39136951 ttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctcctt 39136877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 39390791 - 39390868
Alignment:
Q  115 cttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttca 192  Q
    |||||||||||||||  ||||| |||   || |||| |||||||||||||||  |||||||||||| || ||||||||    
T  39390791 cttcaaattccttcttttttgattcaaattccttcactcggccttcaagttgactctcttttgactcaaactccttca 39390868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 39415782 - 39415843
Alignment:
Q  253 tctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 314  Q
    ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||| || ||||||    
T  39415782 tctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcc 39415843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 39422180 - 39422229
Alignment:
Q  153 cggccttcaagttgcttctcttttgactgaagctccttcatttggctttc 202  Q
    ||||| ||||||||||||||||| |||| ||| ||||||||| |||||||    
T  39422180 cggccatcaagttgcttctctttagactcaaggtccttcattcggctttc 39422229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 579
Target Start/End: Complemental strand, 39602557 - 39602480
Alignment:
Q  502 gcttctcttttgactcaagttctttaacccgacctttaaatttcttctgctttgactcaaattccttcattagagcac 579  Q
    |||||||||||||||||||||| || ||| |||||| || || |||||   ||||||| |||||||| ||| ||||||    
T  39602557 gcttctcttttgactcaagttccttgacctgaccttcaagttgcttctttattgactcgaattcctttatttgagcac 39602480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 39137091 - 39137043
Alignment:
Q  228 tccttcatttggttttcaaaatccttctcttttgattcaaactccttca 276  Q
    ||||||||||||  |||||| ||| |||||||||||| |||||||||||    
T  39137091 tccttcatttggccttcaaattccatctcttttgatttaaactccttca 39137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #57
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 39137348 - 39137300
Alignment:
Q  256 cttttgattcaaactccttcacccggccttcatgttgcatctcttttga 304  Q
    |||||||||||  |||| |||||||||||||||||||  ||||||||||    
T  39137348 cttttgattcatgctccatcacccggccttcatgttgtttctcttttga 39137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #58
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 39220822 - 39220758
Alignment:
Q  114 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttga 178  Q
    ||||||| ||||||||||||||| |||   |||||||  ||||||||||| ||||||||| ||||    
T  39220822 ccttcaagttccttctcctttgattcagattcattcacacggccttcaagctgcttctctcttga 39220758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #59
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 39458532 - 39458496
Alignment:
Q  241 tttcaaaatccttctcttttgattcaaactccttcac 277  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  39458532 tttcaaattccttctcttttgattcaaaatccttcac 39458496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #60
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 39458612 - 39458568
Alignment:
Q  173 ttttgactgaagctccttcatttggctttcgcaatgctcctgttt 217  Q
    |||||||| ||||||||||||| |||||||| |||||| ||||||    
T  39458612 ttttgactcaagctccttcattcggctttcgaaatgcttctgttt 39458568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 19807153 - 19806959
Alignment:
Q  23 aagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattccatctccttcacacagccttcaaat 122  Q
    ||||||| ||||||| | | |||||||||  |||||||||||||||  ||||| ||||||| || ||||| |||||| ||| ||||| | ||||||||||    
T  19807153 aagttgtcctttcaatggcatcaattttgtattgagctcctccacctcgcttttgaaatgcctctctttagattccagctcattcactcggccttcaaat 19807054  T
Q  123 tccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttcgcaatgctcctgttt 217  Q
    || |  || | ||| |||||||| ||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||| |||||| ||||||    
T  19807053 tcttgttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttt 19806959  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 232 - 314
Target Start/End: Complemental strand, 19807322 - 19807240
Alignment:
Q  232 tcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 314  Q
    |||||||| ||||||| ||  ||||||||||| ||  |||||||| |||||||||||| ||| ||||||||||||| ||||||    
T  19807322 tcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctcc 19807240  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 19807312 - 19807238
Alignment:
Q  116 ttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctcctt 190  Q
    |||||||||  |||| |||||  ||||||| ||||  ||||||||| | |||||||||||||||| |||||||||    
T  19807312 ttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctcctt 19807238  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 51575207 - 51575155
Alignment:
Q  254 ctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgact 306  Q
    |||||||||||||||||||||||| || |||||| ||||  ||||||||||||    
T  51575207 ctcttttgattcaaactccttcactcgaccttcaagttgattctcttttgact 51575155  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 51574629 - 51574591
Alignment:
Q  249 tccttctcttttgattcaaactccttcacccggccttca 287  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  51574629 tcctcctcttttgattcaaactccttcacccgaccttca 51574591  T

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