View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4457_low_2 (Length: 455)

Name: NF4457_low_2
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4457_low_2
NF4457_low_2
[»] chr2 (6 HSPs)
chr2 (19-383)||(36338651-36339032)
chr2 (187-302)||(27648486-27648601)
chr2 (384-444)||(36339130-36339187)
chr2 (301-341)||(44686164-44686204)
chr2 (344-378)||(27648394-27648428)
chr2 (344-378)||(44686218-44686252)
[»] chr6 (2 HSPs)
chr6 (187-329)||(353107-353256)
chr6 (195-283)||(14351387-14351473)
[»] chr3 (3 HSPs)
chr3 (187-335)||(53837413-53837568)
chr3 (187-304)||(53833815-53833932)
chr3 (344-379)||(24734349-24734384)
[»] chr1 (1 HSPs)
chr1 (187-304)||(47833942-47834059)
[»] chr5 (4 HSPs)
chr5 (172-305)||(33827629-33827762)
chr5 (187-252)||(23755639-23755704)
chr5 (187-252)||(23821095-23821160)
chr5 (187-252)||(23687654-23687719)
[»] chr4 (1 HSPs)
chr4 (250-305)||(54572992-54573047)
[»] chr7 (3 HSPs)
chr7 (344-379)||(4648283-4648318)
chr7 (170-264)||(17001734-17001826)
chr7 (347-379)||(38787113-38787145)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 36338651 - 36339032
Alignment:
Q  19 aaaaagggggtcacaaattgggtgaacagagaaggatcaaaaagagcaaccacttgaagtagaatataagtctttcgcaactgaaaataatgcatgttca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36338651 aaaaagggggtcacaaattgggtgaacagagaaggatcaaaaagagcaaccacttgaagtagaatataagtctttcgcaactgaaaataatgcatgttca 36338750  T
Q  119 ctagaatcaatcttgataagaactgaattcaacgagattcctcaaggaataaattgttggaaaaatacgacatagaattattataaggtaataaacaaca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||    
T  36338751 ctagaatcaatcttgataagaactgaattcaacgagattcctcaagaaataaattgttggaaaaataccacatagaattattataaggtaatagacagca 36338850  T
Q  219 agaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac------cgggctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||      | || ||    
T  36338851 agaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcgaatattgactgaggcgtgcacgaagcactggttt 36338950  T
Q  313 aagagtatttcgccacctcggataggttac----tg-------tctcatagctagtactctccaggatacaacagtcagttc 383  Q
    ||||||||||||||| |||| |||||||||    ||       |||| | ||||||||||||||||||||||||||||||||    
T  36338951 aagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaacagtcagttc 36339032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 27648601 - 27648486
Alignment:
Q  187 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 286  Q
    |||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| |     
T  27648601 gacatataattattataaggtaataagtaacaagaaatattagcatcaaattaatagagctctaaatataatagaatagagaacaagtaaacttatcgat 27648502  T
Q  287 tattgattgaggcgtg 302  Q
    ||||||||||||||||    
T  27648501 tattgattgaggcgtg 27648486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 36339130 - 36339187
Alignment:
Q  384 aagaagagatgaaagcatctaacaagtttgttctctctcaatgtaacttacgtatccctat 444  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  36339130 aagaagagatgaaagcatctaacaa---tgttctctctcaatgtaacttacgtatccctat 36339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 44686164 - 44686204
Alignment:
Q  301 tgcaccgggcttaagagtatttcgccacctcggataggtta 341  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  44686164 tgcactgggcttaagagtatttcgccacctcggataagtta 44686204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 27648428 - 27648394
Alignment:
Q  344 gtctcatagctagtactctccaggatacaacagtc 378  Q
    |||||||||||| ||||||||||||||||||||||    
T  27648428 gtctcatagctaatactctccaggatacaacagtc 27648394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 44686218 - 44686252
Alignment:
Q  344 gtctcatagctagtactctccaggatacaacagtc 378  Q
    |||||||||||| ||||||||||||||||||||||    
T  44686218 gtctcatagctaatactctccaggatacaacagtc 44686252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 187 - 329
Target Start/End: Complemental strand, 353256 - 353107
Alignment:
Q  187 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 286  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |     
T  353256 gacatagaattattataaggtaataaacaacaagaaatattagcatcaaattaatagaattctaaatacaatagaatagagaataagtaaactcatcgat 353157  T
Q  287 tattgattgaggcgt-------gcaccgggcttaagagtatttcgccacc 329  Q
    |||||| ||||||||       |||| |||||||||||||||||||||||    
T  353156 tattgactgaggcgtgcacgaagcactgggcttaagagtatttcgccacc 353107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 14351473 - 14351387
Alignment:
Q  195 attattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatc 283  Q
    |||||||||| ||||| ||||||||||| |||||| ||| | |||||| || ||||||| ||||||| |||||||||  ||||||||||    
T  14351473 attattataaagtaattaacaacaagaa-tattagtatc-atttaatacaaatctaaatgcaatagagtagagaataaataaacttatc 14351387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 187 - 335
Target Start/End: Original strand, 53837413 - 53837568
Alignment:
Q  187 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 286  Q
    |||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||| |     
T  53837413 gacataaaattattataaggtaataagcaataagaaatattagcatcaaattaatagaactctaaacataatagaatagagaacaagtaaacttatcgat 53837512  T
Q  287 tattgattgaggcgtgc-------accgggcttaagagtatttcgccacctcggat 335  Q
    |||||| ||||||||||       |  |||||||||||||||||||||||||||||    
T  53837513 tattgactgaggcgtgcatgaagtattgggcttaagagtatttcgccacctcggat 53837568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 53833815 - 53833932
Alignment:
Q  187 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 286  Q
    |||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||| |||| ||||||||| |  |||||||||| |     
T  53833815 gacatagaattattataaggtaataagcaataagaaatattaacatcaaattaatagaactctaaatataatataatagagaacaactaaacttatcgat 53833914  T
Q  287 tattgattgaggcgtgca 304  Q
    ||||| ||||||||||||    
T  53833915 tattggttgaggcgtgca 53833932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 379
Target Start/End: Original strand, 24734349 - 24734384
Alignment:
Q  344 gtctcatagctagtactctccaggatacaacagtca 379  Q
    |||||||||||| |||||||||||||||||||||||    
T  24734349 gtctcatagctaatactctccaggatacaacagtca 24734384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 47834059 - 47833942
Alignment:
Q  187 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcaaa 286  Q
    ||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||| |     
T  47834059 gacatagaattattataaggtaataagtaacgagaaatattagcatcaaattaatagatctctaaatataatagaatagagaacaagtaaacttatcgat 47833960  T
Q  287 tattgattgaggcgtgca 304  Q
    |||||| |||||| ||||    
T  47833959 tattgactgaggcatgca 47833942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 305
Target Start/End: Complemental strand, 33827762 - 33827629
Alignment:
Q  172 ttgttggaaaaatacgacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaata 271  Q
    |||| ||||||||  |||| |||| ||||||||||||||||  || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |    
T  33827762 ttgtaggaaaaattagacagagaaatattataaggtaataagtaataagaaatattagcatcaaattaatagaactctaaatataatagaatagagaaca 33827663  T
Q  272 tgtaaacttatcaaatattgattgaggcgtgcac 305  Q
     ||||| |||||    ||||| ||||||||||||    
T  33827662 agtaaatttatcggtcattgactgaggcgtgcac 33827629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 23755639 - 23755704
Alignment:
Q  187 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 252  Q
    ||||||||||||||| || || |||||||||||||||||| || |||||||||||| |||||||||    
T  23755639 gacatagaattattaaaaagtgataaacaacaagaattatcagtatcaaattaatacaactctaaa 23755704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 23821095 - 23821160
Alignment:
Q  187 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 252  Q
    ||||||||||||||| || || |||||||||||||||||| || |||||||||||| |||||||||    
T  23821095 gacatagaattattaaaaagtgataaacaacaagaattatcagtatcaaattaatacaactctaaa 23821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 23687654 - 23687719
Alignment:
Q  187 gacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaa 252  Q
    ||||||||||||||| || || |||||||| ||||| ||| || |||||||||||| |||||||||    
T  23687654 gacatagaattattacaaagtgataaacaataagaaatatcagtatcaaattaatacaactctaaa 23687719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 54573047 - 54572992
Alignment:
Q  250 aaatacaatagaatagagaatatgtaaacttatcaaatattgattgaggcgtgcac 305  Q
    |||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  54573047 aaatacaatagaatagagaataagtaaacttatcgattattgactgaggcgtgcac 54572992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 379
Target Start/End: Original strand, 4648283 - 4648318
Alignment:
Q  344 gtctcatagctagtactctccaggatacaacagtca 379  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4648283 gtctcatagctagtactcttcaggatacaacagtca 4648318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 17001734 - 17001826
Alignment:
Q  170 aattgttggaaaaatacgacatagaattattataaggtaataaacaacaagaattattagcatcaaattaatagaactctaaatacaatagaata 264  Q
    |||||||| ||||||  ||||||  |||||||| | ||||||||||||||||| ||| |  |||||||||||| || |||||||| |||| ||||    
T  17001734 aattgttgaaaaaattagacata--attattatgaagtaataaacaacaagaaatatcattatcaaattaatacaaatctaaataaaataaaata 17001826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 38787145 - 38787113
Alignment:
Q  347 tcatagctagtactctccaggatacaacagtca 379  Q
    |||||| ||||||||||||||||||||||||||    
T  38787145 tcatagttagtactctccaggatacaacagtca 38787113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University