View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4457_low_3 (Length: 414)
Name: NF4457_low_3
Description: NF4457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4457_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 238 - 394
Target Start/End: Original strand, 9027915 - 9028071
Alignment:
| Q |
238 |
ataaaagttaataaatgaaataaaagaatatggtgagaacatgaactaatatacacatgagaaagtttaaaggatgggaggcctagactatcccattgtg |
337 |
Q |
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| T |
9027915 |
ataaaagttcataaatgaaataaaagaatatggtgagaacttgaattaatttacacatgagaaagtctaaaggatgggaggcctagactatcccattatg |
9028014 |
T |
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| Q |
338 |
aagacatatagggtccgtttggttcacatgatatgatataaatatgataggataaag |
394 |
Q |
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| T |
9028015 |
aagacatatagggtccgtttggtgcacatgatatgatagagatatgataagataaag |
9028071 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 9027763 - 9027817
Alignment:
| Q |
114 |
acacatacatgagcttgtctattttataaactacacattgcttgagtttcaatag |
168 |
Q |
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| T |
9027763 |
acacatacatgagcttgtctattttataaactacacattgcttgagtttcaatag |
9027817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 9027693 - 9027738
Alignment:
| Q |
17 |
caaagggttatgatattgtgatttgggtgagaagaaaggcaagaga |
62 |
Q |
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| T |
9027693 |
caaagggttatgatattgtgatttgggtgagaagaaagggaagaga |
9027738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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