View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458-Insertion-11 (Length: 83)

Name: NF4458-Insertion-11
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458-Insertion-11
NF4458-Insertion-11
[»] chr6 (12 HSPs)
chr6 (10-83)||(31560658-31560731)
chr6 (11-83)||(33402773-33402845)
chr6 (12-83)||(33273952-33274023)
chr6 (17-80)||(33287707-33287770)
chr6 (11-67)||(31566993-31567049)
chr6 (18-83)||(33390238-33390303)
chr6 (11-83)||(33306645-33306717)
chr6 (10-68)||(9168932-9168989)
chr6 (11-81)||(33059722-33059792)
chr6 (17-68)||(33360244-33360295)
chr6 (17-83)||(33264814-33264880)
chr6 (11-83)||(33642451-33642523)
[»] scaffold1749 (1 HSPs)
scaffold1749 (12-83)||(159-230)
[»] scaffold0428 (1 HSPs)
scaffold0428 (12-83)||(8920-8991)
[»] chr2 (1 HSPs)
chr2 (12-83)||(17438677-17438748)


Alignment Details
Target: chr6 (Bit Score: 70; Significance: 3e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-32
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 31560731 - 31560658
Alignment:
Q  10 taatcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31560731 taatcccaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 31560658  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 33402773 - 33402845
Alignment:
Q  11 aatcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||    
T  33402773 aatcccaactaaatcttttgaaacacatgaagatttgcactccaatatattcattatcttttgaacaatcttt 33402845  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 33273952 - 33274023
Alignment:
Q  12 atcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||  |||||  |||||||||||    
T  33273952 atcccaactaaatcttttgaaaaacatgaagatttgtacttcaatatattcaagatcgtttgaacaatcttt 33274023  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 33287707 - 33287770
Alignment:
Q  17 aactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatc 80  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||    
T  33287707 aactaaatcttttgaaacccatgaagatttgcactccaatatattcattatcgtctgaacaatc 33287770  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 31567049 - 31566993
Alignment:
Q  11 aatcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattat 67  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  31567049 aatcccaactaaatcttttgaaacacatgaagatttgcactccaatatattcattat 31566993  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 33390238 - 33390303
Alignment:
Q  18 actaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    ||||||||||| |||||||||||||| ||| ||| |||||||||||||||| |  |||||||||||    
T  33390238 actaaatctttcgaaacacatgaagaattgcactccaatatattcattatcctttgaacaatcttt 33390303  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 33306645 - 33306717
Alignment:
Q  11 aatcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    ||||| ||||||||||||||||| | ||||||||||| ||| ||||||| |||||||| |  |||||||||||    
T  33306645 aatcccaactaaatcttttgaaatatatgaagatttgcactccaatatactcattatcttttgaacaatcttt 33306717  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 9168932 - 9168989
Alignment:
Q  10 taatcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatc 68  Q
    |||||| ||||||||||||||||||||||||||||||| || || |||| |||||||||    
T  9168932 taatcccaactaaatcttttgaaacacatgaagatttgcac-tccatatgttcattatc 9168989  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 33059722 - 33059792
Alignment:
Q  11 aatcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatct 81  Q
    ||||| ||||||||||||||||||||||||| ||||| | | ||||||||| |||||| |  |||||||||    
T  33059722 aatcccaactaaatcttttgaaacacatgaatatttgcattccaatatattgattatcttttgaacaatct 33059792  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 33360244 - 33360295
Alignment:
Q  17 aactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatc 68  Q
    ||||||||||||||||||||||||| ||||| | | ||||||||| ||||||    
T  33360244 aactaaatcttttgaaacacatgaatatttgcattccaatatattgattatc 33360295  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 33264814 - 33264880
Alignment:
Q  17 aactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    |||||| |||||||||||||||||||||||| | | |||| || |||||||| |  |||||||||||    
T  33264814 aactaagtcttttgaaacacatgaagatttgcattccaatgtactcattatcttttgaacaatcttt 33264880  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 33642523 - 33642451
Alignment:
Q  11 aatcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    ||||| |||||||||||||||||||| | |||| ||| |||  |||||||| |||||| |  |||||||||||    
T  33642523 aatcccaactaaatcttttgaaacacttaaagacttgcactctaatatattgattatcttttgaacaatcttt 33642451  T

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Target: scaffold1749 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 159 - 230
Alignment:
Q  12 atcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||||||  |||||  |||||||||||    
T  159 atcccaactaaatcttttgaaacgaatgaagatttgcacttcaatatattcaagatcgtttgaacaatcttt 230  T

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Target: scaffold0428 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 8920 - 8991
Alignment:
Q  12 atcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||||||  |||||  |||||||||||    
T  8920 atcccaactaaatcttttgaaacgaatgaagatttgcacttcaatatattcaagatcgtttgaacaatcttt 8991  T

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Target: chr2 (Bit Score: 36; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 17438748 - 17438677
Alignment:
Q  12 atcctaactaaatcttttgaaacacatgaagatttgtacttcaatatattcattatcgtccgaacaatcttt 83  Q
    |||| ||||||||||||||||  ||||||||||||| | | |||||||||||||||| |  |||||||||||    
T  17438748 atcccaactaaatcttttgaattacatgaagatttgcattccaatatattcattatcttttgaacaatcttt 17438677  T

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