View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458-Insertion-2 (Length: 491)
Name: NF4458-Insertion-2
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 128 - 325
Target Start/End: Complemental strand, 5934121 - 5933934
Alignment:
| Q |
128 |
tattaatcaatgtttttagggcactctgtcaacaactaatcacacaattttaacaatggatcaaattcgtcattgaaccctacggaataacaaatttgtc |
227 |
Q |
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| T |
5934121 |
tattaatcaatgtttttagggcactctctcaacaactaatcacacaattttaacaatcgatcaaattcgtcattgaaccttacggaataacaaatttgac |
5934022 |
T |
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| Q |
228 |
tatgaatatgaaacaccactgccgtaattttgattcaatttagataatcacatgaactaaattgcattttgttggataacaacttcaagatgtatttt |
325 |
Q |
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| T |
5934021 |
tatgaatatgaaacaccactgccgtaattttgat----------taatcacatgaacttaattgcattttgttggataacaacttcaagatgtttttt |
5933934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 5934298 - 5934183
Alignment:
| Q |
7 |
agaagcttgatggttatttgtatacatatttcttcctacacttgaactcccagaacaagataattgaatctttgaaccttttcatttcaatatatcttga |
106 |
Q |
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| T |
5934298 |
agaagcttgatggttatttgtatacatatttcttcctacacttgaactcccagaacaagataattgaatcttggaacattttcatttcaatataccttga |
5934199 |
T |
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| Q |
107 |
aaaagccacattgaac |
122 |
Q |
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| T |
5934198 |
aaaagccacattgaac |
5934183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 346 - 491
Target Start/End: Complemental strand, 5933887 - 5933743
Alignment:
| Q |
346 |
atacaaacattacagtgaccccagtgaaactacattcatatctcttgaataagaagatatcatgtttgagcattgtggatgnnnnnnntgtttttgggag |
445 |
Q |
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| T |
5933887 |
ataccaacattacattgacttcagtgaaactagattgatatctcttgaataagataaaa--atgtttgagcattgtggatgaaaaaaatgtttttgggag |
5933790 |
T |
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| Q |
446 |
aacataaaaatggtcgatc-agattccaaaacatttctagtaggtga |
491 |
Q |
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| T |
5933789 |
aacataaaaatggtcgatcaagattcccaaacatttctagtaggtga |
5933743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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