View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4458-Insertion-3 (Length: 488)
Name: NF4458-Insertion-3
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458-Insertion-3 |
 | |
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| [»] chr1 (2 HSPs) |
| |
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| [»] chr4 (5 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 26 - 488
Target Start/End: Complemental strand, 1948069 - 1947607
Alignment:
| Q |
26 |
ttaatagttcaaccatttgattacaacttttttagttcaatgacatatttaaaaattctcaaatagttaagagatttattgattaattaaaccttatttt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1948069 |
ttaatagttcaaccatttgattacaacttttttagttcaatgacctatttaaaaattctcaaatagttaagagatttattgattaattaaaccttatttt |
1947970 |
T |
|
| Q |
126 |
aaataacttgaaaaagctgaaataaatcttccttatcataaaaaatatgcatattcttcaattaatcaacactcatttattgagaaattttttatacaaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1947969 |
aaataacttgaaaaagctgaaataaatcttccttatcataaaaaatatgcatattcttcaattaatcaacactcatttattgagaaatttttggtacaaa |
1947870 |
T |
|
| Q |
226 |
aatata-nnnnnnnnngaacaaatcaaaatgagatatatttaacaacggtgattcatcctgcacaaggcatgcaaaaggagaaacaccagaaagtattta |
324 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1947869 |
aatatatatatattttgaacaaatcaagatgagatatatttaacaacggtgattcatcctgcacaaggcatgcaaaaggagaaacactggaaagtattta |
1947770 |
T |
|
| Q |
325 |
cacagtaacaatgctgctaaggaaacagcagcaacaaaacnnnnnnnngcaaactaattacacctgtacactcatacacagaagcgggtgtttccaccag |
424 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1947769 |
cacagtaacaatgctgctaaggaaacagtagcaacaaaa-aaaaaaaaaaaaactaattacacttgtacactcatacacagaagcgggtgtttccaccag |
1947671 |
T |
|
| Q |
425 |
tcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaatttagcttga |
488 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
1947670 |
tcaatataactataacaaaaggaaacatgtttagattctatccataagaacgaatttagcttga |
1947607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Complemental strand, 7764595 - 7764552
Alignment:
| Q |
443 |
aaggaaacatgcttagattttatccataagaacgaatttagctt |
486 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
7764595 |
aaggaaacatgctttgattttaaccataagaacgaatgtagctt |
7764552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 241 - 488
Target Start/End: Complemental strand, 7795684 - 7795444
Alignment:
| Q |
241 |
gaacaaatcaaaatgagatat-atttaacaacggtgattcatcctgcacaaggcatgcaaaaggagaaacaccag-aaagtatttacacagtaacaatgc |
338 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||||| |||||||||||| |||||||||||||||| | | ||| |||||||||||| |||| || |
|
|
| T |
7795684 |
gaacaaatcaaaatgagatatgaattaaccacggtgattcgacctgcacaaggcgtgcaaaaggagaaacatcggaaaattatttacacagtcacaaagc |
7795585 |
T |
|
| Q |
339 |
tgctaaggaaacagcagcaacaaaacnnnnnnnngcaaactaattacacctgtacactcatacacagaagcgggtgtttccaccagtcaatataactata |
438 |
Q |
| |
|
|||||| ||||||| | ||||||||| || || ||||||| | |||||| |||||| | |||||| |||||||||| ||| |||||||||| |
|
|
| T |
7795584 |
tgctaaagaaacagtaacaacaaaac-------agcgaa--aattacatccgtacacccatacataaaagcggatgtttccaccgatcagtataactata |
7795494 |
T |
|
| Q |
439 |
acaaaaggaaacatgcttagattttatccataagaacgaatttagcttga |
488 |
Q |
| |
|
||||||||| | || |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
7795493 |
acaaaaggatgcctgtttagattttatccaaaagaatgaatttagcttga |
7795444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 380 - 488
Target Start/End: Original strand, 30566587 - 30566695
Alignment:
| Q |
380 |
aattacacctgtacactcatacacagaagcgggtgtttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaat |
479 |
Q |
| |
|
|||||||| |||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||| | ||| |||||||||| |
|
|
| T |
30566587 |
aattacacatgtatacccatacacagaagcgaatgtttccaccaatcaatataactataacaaaaggaagcctgcttagatttcaaccacaagaacgaat |
30566686 |
T |
|
| Q |
480 |
ttagcttga |
488 |
Q |
| |
|
||||||||| |
|
|
| T |
30566687 |
ttagcttga |
30566695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 7818690 - 7818592
Alignment:
| Q |
390 |
gtacactcatacacagaagcgggtgtttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaatttagcttga |
488 |
Q |
| |
|
|||||| |||||| | |||||| ||||||||| |||| |||||| |||||||||||| | ||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7818690 |
gtacacccatacataaaagcggatgtttccactcgtcagtataacaataacaaaaggatgcctgcttagattttatccaaaagaacgaatttaacttga |
7818592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 25056603 - 25056692
Alignment:
| Q |
243 |
acaaatcaaaatgagatat--atttaacaacggtgattcatcctgcacaaggcatgcaaaaggagaaacaccagaaagtatttacacagt |
330 |
Q |
| |
|
||||||||||||||| ||| || ||| |||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||| |
|
|
| T |
25056603 |
acaaatcaaaatgaggtatcaataaaaccacggtgattcatcctgcacaaggcgtgcaaaaggagaaccatcggaaagtatttacacagt |
25056692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 486
Target Start/End: Original strand, 25056725 - 25056831
Alignment:
| Q |
380 |
aattacacctgtacactcatacacagaagcgggtgtttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaat |
479 |
Q |
| |
|
||||||||||| ||| |||||| | || ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||| | |||| ||| |||| |
|
|
| T |
25056725 |
aattacacctgaacaaccatacaaaaaatcggatgttttcaccagtcaatgaaactataacaaaaggaagcatgcttagatttcaatcataggaatgaat |
25056824 |
T |
|
| Q |
480 |
ttagctt |
486 |
Q |
| |
|
||||||| |
|
|
| T |
25056825 |
ttagctt |
25056831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 488
Target Start/End: Complemental strand, 44603482 - 44603271
Alignment:
| Q |
274 |
tgattcatcctgcacaaggcatgc--aaaaggagaaacaccagaaagtatttacacagtaacaatgctgctaaggaaacagcagcaacaaaacnnnnnnn |
371 |
Q |
| |
|
||||||| |||||||||||| ||| | |||||||||||||| ||||||| |||| ||| |||||| |||| |||||||||||||||||| |
|
|
| T |
44603482 |
tgattcagcctgcacaaggcgtgcgcagaaggagaaacaccaaaaagtatctacatagtcacaatgtcactaatgaaacagcagcaacaaaaaagaa--- |
44603386 |
T |
|
| Q |
372 |
ngcaaactaa-ttacacctgtacactcatacacagaagcgggtgtttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccata |
470 |
Q |
| |
|
||| ||| ||||||||| |||| |||||||| | | |||||||||||| || |||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
44603385 |
---aaagtaaattacacctgaacacccatacacaacaaagagtgtttccaccattctgtataactataacaaaaataagcatgcttagattttagccata |
44603289 |
T |
|
| Q |
471 |
agaacgaatttagcttga |
488 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
44603288 |
ggaacgaatttagcttga |
44603271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 486
Target Start/End: Original strand, 2089150 - 2089223
Alignment:
| Q |
413 |
tgtttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaatttagctt |
486 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||| | ||||| ||||| | |||||| ||| ||||||||| |
|
|
| T |
2089150 |
tgtttccaccaatcagtaaaactataacaaaaggaagcttgcttggatttcaaccataaaaacctatttagctt |
2089223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 488
Target Start/End: Complemental strand, 40305479 - 40305371
Alignment:
| Q |
380 |
aattacacctgtacactcatacacagaagcgggtgtttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaat |
479 |
Q |
| |
|
|||||||||| ||||| || |||||||| || |||||||||| |||| |||||||||||||||| || |||||| |||| | |||||| ||||||| |
|
|
| T |
40305479 |
aattacacctatacacctattcacagaagtggatgtttccaccggtcagtataactataacaaaaaaaagtctgcttaaatttcaaccataaaaacgaat |
40305380 |
T |
|
| Q |
480 |
ttagcttga |
488 |
Q |
| |
|
||||||||| |
|
|
| T |
40305379 |
ttagcttga |
40305371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 486
Target Start/End: Original strand, 643690 - 643796
Alignment:
| Q |
380 |
aattacacctgtacactcatacacagaagcgggtgtttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaat |
479 |
Q |
| |
|
||||||||||| |||| |||||||| | ||| ||| ||||||| ||| || |||||||||||||||| | ||||| ||||| | ||||||||||| || |
|
|
| T |
643690 |
aattacacctgaacacccatacacatagtcggatgtgtccaccaatcagtaaaactataacaaaaggatgcttgcttggatttcaaccataagaacgtat |
643789 |
T |
|
| Q |
480 |
ttagctt |
486 |
Q |
| |
|
||||||| |
|
|
| T |
643790 |
ttagctt |
643796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 39052249 - 39052168
Alignment:
| Q |
407 |
agcgggtgtttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaatttagcttga |
488 |
Q |
| |
|
||||| |||||||||||||| |||| | |||| || ||||||||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
39052249 |
agcggatgtttccaccagtcgtgataattgtaactgaaagaaacatgctttgattttaaccataaaaacgaatttagcttga |
39052168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 31874201 - 31874291
Alignment:
| Q |
242 |
aacaaatcaaaatgagatata--tttaacaacggtgattcatcctgcacaaggcatgcaaaaggagaaacaccagaaagtatttacacagt |
330 |
Q |
| |
|
||||||||||||||||||||| || ||| || ||||||| | |||||||| | ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
31874201 |
aacaaatcaaaatgagatataaattaaaccacagtgattccgcttgcacaagacgtgcaaaaatcgaaacaccggaaagtatttacacagt |
31874291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 4708406 - 4708320
Alignment:
| Q |
241 |
gaacaaatcaaaatgagat--atatttaacaacggtgattcatcctgcacaaggcatgcaaaaggagaaacaccagaaagtatttaca |
326 |
Q |
| |
|
||||||||||||||||||| ||||| || | |||||| || ||| ||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
4708406 |
gaacaaatcaaaatgagatatatattaaatagcggtgaatcgtcccacacaaggcatg-aaaaggagaaacaccagcaaatatttaca |
4708320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 326
Target Start/End: Original strand, 47800494 - 47800580
Alignment:
| Q |
242 |
aacaaatcaaaatgagat---atatttaacaacggtgattcatcctgcacaaggcatgcaaaaggagaaacaccagaaagtatttaca |
326 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||| ||||||||||||||||||||||||| | |||||| || |||||||| |
|
|
| T |
47800494 |
aacaaatcaaaatgagatttcataataaaca-cggtgatatatcctgcacaaggcatgcaaaaggatgaccaccagcaaatatttaca |
47800580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 488
Target Start/End: Complemental strand, 4708238 - 4708166
Alignment:
| Q |
416 |
ttccaccagtcaatataactataacaaaaggaaacatgcttagattttatccataagaacgaatttagcttga |
488 |
Q |
| |
|
|||||||||||| ||||| |||| |||||| ||||| | ||||||| ||||||||||||||| ||||||| |
|
|
| T |
4708238 |
ttccaccagtcatggtaactgtaaccgaaggaagcatgccttgattttaaccataagaacgaattaagcttga |
4708166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 2737692 - 2737634
Alignment:
| Q |
241 |
gaacaaatcaaaatgagatatat-ttaacaacggtgattcatcctgcacaaggcatgca |
298 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
2737692 |
gaacaaacaaaaatgagatatatattaacaacggtgatttatcccgcacaaggcgtgca |
2737634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 12547958 - 12547913
Alignment:
| Q |
48 |
acaacttttttagttcaatgacatatttaaaaattctcaaatagtt |
93 |
Q |
| |
|
|||| |||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
12547958 |
acaatttttttagtttaaggacctatttaaaaattctcaaatagtt |
12547913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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