View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4458-Insertion-4 (Length: 462)
Name: NF4458-Insertion-4
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458-Insertion-4 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 108 - 462
Target Start/End: Complemental strand, 26578009 - 26577653
Alignment:
| Q |
108 |
tgatggatcacaagttgacatttgatttcactgtacacacgaacacactgttttgaacactccacaatcccacaatcttttgtccattcattgaaacatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26578009 |
tgatggatcacaagttgacatttgatttcactgtacacacgaacacactgttttgaacactccacaatcccacactcttttgtccattcattgaaacatc |
26577910 |
T |
|
| Q |
208 |
ggatcacacaatttgcaaagggtaatatcagaatagaaataaaatgtgcat--gtgtttcaaatttaattcggaacggttggaatttaattttgagacat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26577909 |
ggatcacacaatttgcaaagggtaatatcagaatagaaataaaatgtgcatatgtgtttcaaatttaattcggaacggttggaatttaattttgagacat |
26577810 |
T |
|
| Q |
306 |
atcgatatctcttattttagaatgagaaaaattaagatataaggcttgcgggtgatggatggcgtatgtatgtgttagcagttaaatacgagactgagaa |
405 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26577809 |
attgatatctcttattttagaatgagaaaaattaagatataaggcttgcgggtgatggatggcgtatgtatgtgttagcagttaaatacgaaactgagaa |
26577710 |
T |
|
| Q |
406 |
agggcgaattaacagagggggttggttgtcttctgtgtggtggaaagacttttgtga |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26577709 |
agggcgaattaacagagggggttggttgtcttctgtgtggtggaaagacttgtgtga |
26577653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 26578159 - 26578059
Alignment:
| Q |
8 |
gtgaactcaagccccaaggctattgtctggaggaattaattgaagaaaaggaatagggatgtgggacccatctatctagctggccgttacatagtggtag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
26578159 |
gtgaactcaagccccaaggctattgtctggaggaattaattgaagaaaaggaatagggatgtgggatccatctatctagctggccattacatagtggtag |
26578060 |
T |
|
| Q |
108 |
t |
108 |
Q |
| |
|
| |
|
|
| T |
26578059 |
t |
26578059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University