View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458-Insertion-6 (Length: 379)
Name: NF4458-Insertion-6
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 38363751 - 38364126
Alignment:
| Q |
7 |
agaggtcccatatattacatggttttgagttcacaagattcaggaaaaggaacaccaagaggaatattgattaccaataggcaccattatatgaggataa |
106 |
Q |
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| T |
38363751 |
agaggtcccatatatcacatggttttgagttcacaagattcaggaaaaggaacaccaagaggaatattgattaccaataggcaccattatatgaggataa |
38363850 |
T |
|
| Q |
107 |
cactctggatatagcatatgatagataaata-aaataaaaggatatttcaaaagtggcattgcacgtgatttcg------agggacatatccacaatatt |
199 |
Q |
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| T |
38363851 |
cactctggatatagcatatgatagatatagatatataaaaggatatttcaaaagtggcattgcacgtgatttcgatttcaagtgacatatccacaacatt |
38363950 |
T |
|
| Q |
200 |
tggaattgtacacactggcgatggccatatttgttaatataattgacacgaattaaagtatatgaccactgaccacgatgccttgatgcacgtttgagca |
299 |
Q |
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| T |
38363951 |
tggaattgtacacactggccatgcccattcttgttactacaattgacacgaattaaagtatatgaccagtgaccacgatgccttaatgcacgtttgagca |
38364050 |
T |
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| Q |
300 |
acttctattccttttagccatnnnnnnntcctataactttggtataaatcatatcaaaagacccttttagtggcat |
375 |
Q |
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| T |
38364051 |
acttctattccttttagctataaaaaaatcttataactttggtatatatcatatcaaaagacccttttagtggcat |
38364126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 38370220 - 38370597
Alignment:
| Q |
7 |
agaggtcccatatattacatggttttgagttcacaagattcaggaaaaggaacac-------caagaggaatattgattaccaataggcaccattatatg |
99 |
Q |
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| T |
38370220 |
agaggtcccatatatcacatggttttgagttcacaagattcaggaaaaggaacacacacgaccaagagcaatattgattaccaataggcaccgttatatg |
38370319 |
T |
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| Q |
100 |
aggataacactctggatatagcatatgatagataaataaaataaaaggatatttcaaaagtggcattgcacgtgatttcga------gggacatatccac |
193 |
Q |
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|||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
38370320 |
aggataacactctggatatagcatat-------agatagaa-aaaaggatatttcaaaagtggcattgcacgtgatttcgatttcaagtgacatatccac |
38370411 |
T |
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| Q |
194 |
aatatttggaattgtacacactggcgatggccatatttgttaatataattgacacgaattaaagtatatgaccactgaccacgatgccttgatgcacgtt |
293 |
Q |
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|| |||||||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
38370412 |
aacatttggaattgtacacactggccatgcccattcttgttactacaattgacacgaattaaagtatatgaccagtgaccacgatgccttagtgcacgtt |
38370511 |
T |
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| Q |
294 |
tgagcaacttctattccttttagccatnnnnnnntcctataactttggtataaatcatatcaaaagacccttttagtggcatctca |
379 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
38370512 |
tgagcaacttctattccttttagccataaaaaaatcctataactttggtatatatcatatcaaaagacccttttaatggcatctca |
38370597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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