View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4458-Insertion-7 (Length: 363)
Name: NF4458-Insertion-7
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458-Insertion-7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 41247707 - 41248062
Alignment:
| Q |
8 |
tatatatgaattttaatgaaacgcacacccatgcagaagaagggtagcaataactcctgcatatttgtgaatgggtggtagcagagtcattctgcaacta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41247707 |
tatatatgaattttaatgaaacgcacacccatgcagaagaagggtagcaataactcctgcatatttgtgaatgggtggtagcagagtcattctgcaacta |
41247806 |
T |
|
| Q |
108 |
gtgacccctcaaagaagagagagagtgatcatcgtagacacggagatgccgtgtctgcacattgaaagctctgtaaggaacgacacaagttgcagatatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41247807 |
gtgacccctcaaagaagagagagagtgatcatcgtagacacggagatgccgtgtctgcacattgaaagctctgtaaggaacgacacaagttgcagatatt |
41247906 |
T |
|
| Q |
208 |
tgtctcactaccattcctcatcacttccatatgctaacattttcctgtgttgtacaccttcatcatttatttatttgtttgtgacattttcctaaaatac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41247907 |
tgtctcactaccattcctcatcacttccatatgctaacattttcctgtgttgtacaccttcatcatttatttatttgtttgtgacattttcctaaaatac |
41248006 |
T |
|
| Q |
308 |
attcgatgcacctaaagataactcaaataagccaatcaaatactcccacggtcaca |
363 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248007 |
attggatgcacctaaagataactcaaataagccaatcaaatactcccacggtcaca |
41248062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University