View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458-Insertion-8 (Length: 329)

Name: NF4458-Insertion-8
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458-Insertion-8
NF4458-Insertion-8
[»] chr6 (1 HSPs)
chr6 (7-329)||(973371-973693)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 973693 - 973371
Alignment:
Q  7 aaggacaactaatcattagctagagcttgagtcagagattcaaaatcaaaatcttaacatattaagcttcaaatatttatacaatttgaaacaaaagcag 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  973693 aaggacaactaatcattagcttgagcttgagtcagagattcaaaatcaaaatcttaacatattaagctacaaatatttatacaatttgaaacaaaagcag 973594  T
Q  107 tgattgtgataataatataggattttactaaaataatagcatggttggcaatgagaatatatatatgcttcatcgtttggggtttctcaaattaacacat 206  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  973593 tgattgagataataatataggattttactaaaataatagcatgcttgccaatgagaatatatatatgcttcatcgtttgcggtttctcaaattaacacat 973494  T
Q  207 atctcacatatataatccacaacctactaactcatttactatataataaaaaagcatggaaatatacttataatagtatatgcacctatatattacaatc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  973493 atctcacatatataatccacaacctactaactcatttactatataataaaaaagcatgcaaatatacttataatagtatatgcacctatatattacaatc 973394  T
Q  307 cataactaatttagctcttaatt 329  Q
    |||||||||||||||||||||||    
T  973393 cataactaatttagctcttaatt 973371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University