View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458-Insertion-9 (Length: 284)

Name: NF4458-Insertion-9
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458-Insertion-9
NF4458-Insertion-9
[»] chr2 (20 HSPs)
chr2 (8-284)||(8578647-8578923)
chr2 (74-183)||(7612713-7612822)
chr2 (8-132)||(8577697-8577821)
chr2 (77-179)||(9060325-9060427)
chr2 (95-200)||(9329437-9329542)
chr2 (124-216)||(17565304-17565396)
chr2 (124-183)||(9321858-9321917)
chr2 (102-179)||(9283401-9283478)
chr2 (96-179)||(9275362-9275445)
chr2 (96-179)||(9316864-9316947)
chr2 (105-179)||(10348651-10348725)
chr2 (102-179)||(10372727-10372804)
chr2 (90-163)||(14551152-14551225)
chr2 (95-179)||(9292766-9292850)
chr2 (92-179)||(8572729-8572815)
chr2 (92-179)||(12018141-12018228)
chr2 (92-158)||(9365430-9365496)
chr2 (102-179)||(7114872-7114949)
chr2 (102-179)||(10336656-10336733)
chr2 (74-163)||(12011836-12011925)
[»] chr5 (1 HSPs)
chr5 (95-212)||(36225588-36225705)
[»] scaffold0667 (1 HSPs)
scaffold0667 (124-179)||(5326-5381)
[»] chr8 (1 HSPs)
chr8 (96-155)||(41965973-41966032)
[»] chr3 (2 HSPs)
chr3 (124-183)||(37463389-37463448)
chr3 (129-195)||(39428750-39428816)
[»] chr1 (2 HSPs)
chr1 (90-171)||(29467060-29467141)
chr1 (90-184)||(29452573-29452667)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 8578923 - 8578647
Alignment:
Q  8 gttagattagagaaatcaagttggtagagatcatagttgtggcggaggatgatcttgatactgaaggagtttttgaagtaatgtttggtgaaggtgtggg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8578923 gttagattagagaaatcaagttggtagagatcatagttgtggcggaggatgatcttgatactgaaggagtttttgaggtaatgtttggtgaaggtgtggg 8578824  T
Q  108 aatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaacaattccgttggaac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8578823 aatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggatatcgatgaacaattccgttggaac 8578724  T
Q  208 atcagccatgaaatcgaaactggtttagggttttctannnnnnnnnccttcatttctaattcattgtgaggtttgga 284  Q
    |||||||||| ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  8578723 atcagccatggaatcgaaactggtttagggttttctatttttttttccttcatttctaattcattgtgaggtttgga 8578647  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 7612713 - 7612822
Alignment:
Q  74 gagtttttgaagtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagc 173  Q
    |||||||||| || | | || |||||| |||||||||| || ||||||  ||| |||||||||||||||||||||||||| |||| |||||| |||||||    
T  7612713 gagtttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagc 7612812  T
Q  174 gggagaggat 183  Q
    | ||||||||    
T  7612813 gagagaggat 7612822  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 8577821 - 8577697
Alignment:
Q  8 gttagattagagaaatcaagttggtagagatcatagttgtggcggaggatgatcttgatactgaaggagtttttgaagtaatgtttggtgaaggtgtggg 107  Q
    |||||||||| |||||||||||||||||||||  ||||||||| |||||| |  |||| ||||| ||||||||||| ||||   ||| ||||| ||||||    
T  8577821 gttagattagggaaatcaagttggtagagatcggagttgtggcagaggataaaattgaaactgagggagtttttgaggtaaaagttgatgaagttgtggg 8577722  T
Q  108 aatctatgaaggatcgaagtgattt 132  Q
    |||| || ||||||| || ||||||    
T  8577721 aatcaattaaggatcaaattgattt 8577697  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 9060427 - 9060325
Alignment:
Q  77 tttttgaagtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcggg 176  Q
    ||||||| |||| | || |||||| |||| ||||| || ||||||  ||||||||| ||| ||||||||||||||||||| ||||| || ||||||||||    
T  9060427 tttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcggg 9060328  T
Q  177 aga 179  Q
    |||    
T  9060327 aga 9060325  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 9329437 - 9329542
Alignment:
Q  95 gtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaaca 194  Q
    |||||| |||||||||| || | ||||  ||||||||| ||| |||| |||||||||||||| |||| ||| ||||||||||||||||| ||  | ||||    
T  9329437 gtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgttaaca 9329536  T
Q  195 attccg 200  Q
    ||||||    
T  9329537 attccg 9329542  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 17565396 - 17565304
Alignment:
Q  124 aagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaacaattccgttggaacatcagccat 216  Q
    ||||||||| ||  ||||||||| |||||| ||||||||||| |||||||| |||||||| ||  |||| ||||||| ||||| |||||||||    
T  17565396 aagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggatttcagtgaataattccgatggaagatcagccat 17565304  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 9321858 - 9321917
Alignment:
Q  124 aagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggat 183  Q
    ||||||||||||| ||||||||||| ||||||| |||| ||| |||||||||||||||||    
T  9321858 aagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 9321917  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 9283478 - 9283401
Alignment:
Q  102 tgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    |||| |||||||| | ||||||||||||||||||| |||||||||||||||| || ||||  || ||||||| |||||    
T  9283478 tgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactggtaagcaggaga 9283401  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 9275362 - 9275445
Alignment:
Q  96 tgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    ||||| |||||||||| || || |||  ||||||||| || ||||||||||||| |||||| |||||||| ||||| |||||||    
T  9275362 tgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactggtaaccgggaga 9275445  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 9316864 - 9316947
Alignment:
Q  96 tgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    ||||| |||| |||||||| || |||  ||||||||| ||| ||||||||||||||||||| |||| ||| |||||| ||||||    
T  9316864 tgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggaga 9316947  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 10348651 - 10348725
Alignment:
Q  105 gggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    ||||||| || ||||||  ||||||||| ||  ||||||||||||||||||| |||| ||| |||||||||||||    
T  10348651 gggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggaga 10348725  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 10372727 - 10372804
Alignment:
Q  102 tgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    |||||||||| || || |||  || |||||| ||| ||||||||||||||||||| |||| ||| |||||||||||||    
T  10372727 tgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggaga 10372804  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 14551152 - 14551225
Alignment:
Q  90 gtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgt 163  Q
    ||||| ||||| |||||||||| || | |||| |||||||||| ||| ||||||||||| |||| |||||||||    
T  14551152 gtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggaggagggattgt 14551225  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 9292766 - 9292850
Alignment:
Q  95 gtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    |||||| |||| ||||| || | ||||  ||||||||| |||||||||||||||| |||||| |||| ||| |||| ||||||||    
T  9292766 gtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgggaga 9292850  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 8572815 - 8572729
Alignment:
Q  92 ttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    ||||||||| |||||||||| || |  |||  ||||||||| ||| ||||||||||||||||||| |||| ||| |||| ||||||||    
T  8572815 ttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggagaagtgatt-tactggtatgcgggaga 8572729  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 12018228 - 12018141
Alignment:
Q  92 ttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    ||||||||| |||| ||||| || | ||||  ||||||||| ||| |||| |||||||| ||||| |||| ||| |||||||||||||    
T  12018228 ttggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcgggaga 12018141  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 9365430 - 9365496
Alignment:
Q  92 ttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaaggg 158  Q
    |||||||||||||| ||||| || | ||||  ||||||||| ||  |||||||||||||||||||||    
T  9365430 ttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaaggg 9365496  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 7114949 - 7114872
Alignment:
Q  102 tgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    |||||||||| || ||||||  ||||||||| ||| ||||||||||||| ||||| ||| |||| |||| ||| ||||    
T  7114949 tgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtaggcgagaga 7114872  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 10336656 - 10336733
Alignment:
Q  102 tgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    |||| ||||| || ||||||  ||||||||| ||  ||||||||||||||||||| |||| ||| ||||| |||||||    
T  10336656 tgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggaga 10336733  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 12011925 - 12011836
Alignment:
Q  74 gagtttttgaagtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgt 163  Q
    |||||||||| || | | ||||||||| |||| ||||| || | ||||  ||||||||| ||| |||| |||||||||||||| ||||||    
T  12011925 gagtttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgt 12011836  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 36225588 - 36225705
Alignment:
Q  95 gtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaaca 194  Q
    |||||| |||| ||||| || || |||  ||||||||| ||| |||||||||||||||| |||||||| ||  |||||||||||||||| ||| |||||     
T  36225588 gtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcgggagaggatttcggtgaacc 36225687  T
Q  195 attccgttggaacatcag 212  Q
    | |||| |||||||||||    
T  36225688 aatccgatggaacatcag 36225705  T

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Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 5326 - 5381
Alignment:
Q  124 aagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggaga 179  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||| |||||||||||||    
T  5326 aagtgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggaga 5381  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 41966032 - 41965973
Alignment:
Q  96 tgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaa 155  Q
    ||||| |||||||||| || ||||||||||||||||| ||  ||||||||||||||||||    
T  41966032 tgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggagaa 41965973  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 37463389 - 37463448
Alignment:
Q  124 aagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggat 183  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||| ||||| |||||||||||    
T  37463389 aagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggat 37463448  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 39428750 - 39428816
Alignment:
Q  129 atttagaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaacaa 195  Q
    |||| ||| ||||||||||| |||| |||||||| || ||||||||||||||||| ||| |||||||    
T  39428750 attttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcggtgaacaa 39428816  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 29467141 - 29467060
Alignment:
Q  90 gtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaa 171  Q
    ||||| ||||| |||||||||| || | |||| |||||||||| ||  |||| ||||||||||| ||||||||||| |||||    
T  29467141 gtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 29452667 - 29452573
Alignment:
Q  90 gtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggata 184  Q
    ||||| ||||| |||| ||||| || | |||| |||||||||| ||  |||| ||||||||||| ||||||||||| |||||  | |||||||||    
T  29452667 gtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaacagagagaggata 29452573  T

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