View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_11 (Length: 469)
Name: NF4458_high_11
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 5214146 - 5214581
Alignment:
| Q |
19 |
aaaaatccctcaaaccatgaacaactcatctgcaactcccctaatttatcctcaaatgattattcaaatgactcaaaaacattgctaaaatattatatga |
118 |
Q |
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| T |
5214146 |
aaaaatccctcaaaccatgaacaactcatctgaaactcccctaatttatcctcaaatgattattcaaatgactcaaaaacattactaaaatattatat-- |
5214243 |
T |
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| Q |
119 |
tatgatataatatagtgccatcaaatagtagtgtaggatcctatttcaactaaattgaattgaacatttcattatcatgaagaaacatggtaatccgttg |
218 |
Q |
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| T |
5214244 |
---gatataatatagtgtcatcaaatagtagtgtagggtcctatttcaactaaattgaattgaacatttcattatcatgaagaaacatggtaatccgttg |
5214340 |
T |
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| Q |
219 |
aaataatttccaacgggctataattgtttttggtacttggcatgttggagctagatgttgattggcattttctcatcaatgaggtgtcaaaatctatgat |
318 |
Q |
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| T |
5214341 |
aaataattttcaacgggctataattgtttttggtacttggcatgttggagctagatgttgattggcattttcttatcaatgaggtgtcaaaatctatgat |
5214440 |
T |
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| Q |
319 |
tggattttacctaaccaataatgtcatttttgtctaacttcaaattgataattagccaaaaaattattcacatggacatgtttcattgctagcatcacag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5214441 |
tggattttacctaaccaataatgtcatttttgtctagcttcaaattgataattagccaaaaaattattcacatggacatgtttcattactagcatcacag |
5214540 |
T |
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| Q |
419 |
gcgataaatatttgcttccccgacctcggtagcgtcctttg |
459 |
Q |
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| T |
5214541 |
gcgataattatttgcttccccgaccttggtagcgtcctttg |
5214581 |
T |
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