View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4458_high_13 (Length: 457)
Name: NF4458_high_13
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_13 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 15096376 - 15096820
Alignment:
| Q |
11 |
catcatcatagttaacaacttttactggttaacattattgatcgaataattaacaggagataaccaaaatgaaatactcataacatcacatagtactatc |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15096376 |
catcatcatagttaacaacttttagtggtgaacattattgaccgaataattaacatgagataaccaaaatga--tactcataacatcacatagtactatc |
15096473 |
T |
|
| Q |
111 |
gaaagcgacatgcaattgcaaagtgaggaccatttaagatgtttactaccaaataaaacgttgtaatgtgtgacatgacatgttttctttgcatactgta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15096474 |
gaaagcgacatgcaattgcaaagtgaggactatttaagatgtttactaccaaataaaacgttgtaatgtgtgacatgacatgtttcctttgcatactgta |
15096573 |
T |
|
| Q |
211 |
gttgtagtgttacgtggctcatcatgtgaactgtgaagtttaaagtttcggttcagttccaagctatttatagcatttgcattgcagtgacaatctttat |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15096574 |
gttgtagtgttacgtggctcctcatgtgaactgtgaagtttaaagtttcggttcagttccaagctatttatagcatttgcattgcagtgacaatctttat |
15096673 |
T |
|
| Q |
311 |
ctaacaacaaaagataaaagatagaacaagaaaggattataatgagtgttgcagcttcaaaatctgtaacagaatcagcaacacctgaagctaaagtttc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15096674 |
ctaacaacaaaagataaaagatagaacaagaaagaattataatgagtgttgcagcttcaaaatctgtaacagaatcagcaacacctgaagctaaagtttc |
15096773 |
T |
|
| Q |
411 |
aggcattttcatatatcctgttaagtcatgccgtggaatttctcttt |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15096774 |
aggcattttcatatatcctgttaagtcatgccgtggaatttctcttt |
15096820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 15101241 - 15101314
Alignment:
| Q |
384 |
atcagcaacacctgaagctaaagtttcaggcattttcatatatcctgttaagtcatgccgtggaatttctcttt |
457 |
Q |
| |
|
|||| |||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15101241 |
atcaacaacacctgatgctaaggttacaggccttttcatatatcctgttaagtcatgccgtggaattcctcttt |
15101314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 15090826 - 15090888
Alignment:
| Q |
395 |
ctgaagctaaagtttcaggcattttcatatatcctgttaagtcatgccgtggaatttctcttt |
457 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
15090826 |
ctgaagctaaaatttcagccattttcatttatccaattaagtcttgccgtggaatttctcttt |
15090888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University