View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_20 (Length: 394)
Name: NF4458_high_20
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 10170387 - 10170031
Alignment:
| Q |
23 |
ggtcccaccaccagcaacacgaggaatacgtgaaacagcacgtccagtaccccatgattcagctgaggtttggtggccagctttacggctgacagcgtag |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10170387 |
ggtcccaccaccagcaacacgaggaatacgtgaaacagcacgtccagtaccccatgattcagctgaggtttggtggccagctttacggctgacagcgtag |
10170288 |
T |
|
| Q |
123 |
ggctgtcgggagtttttggaaatgttggaatggacgaaattgacgatgtcaggacggattgaagcacgcatgacatcggggattggaagggtggtcggtg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
10170287 |
ggctgtcgggagtttttggaaatgttggaatggacgaaattgacgatgtcaggacggattgaagcacgcatgacatcggggattggaagggtgtttggtg |
10170188 |
T |
|
| Q |
223 |
aatcggtggacatttccgattctagggtttggattgtgacaaggggacgtgctgctgctgcggcggcggccattggtggaggaagaagaaacactagcta |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10170187 |
aatcggtggacatttccgattctagggtttggattgtgacaaggggacgtgctgctgctgctgcggcggccattggtggaggaagaagaaacactagcta |
10170088 |
T |
|
| Q |
323 |
gggtttttgcgggaggctactgctaagtgtgtgagaagaagggtctgttttgtgatg |
379 |
Q |
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| T |
10170087 |
gggtttttgcgggaggctactgctaagtgtgtgagaagaagggtctgttatgtgatg |
10170031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 17027080 - 17026839
Alignment:
| Q |
27 |
ccaccaccagcaacacgaggaatacgtgaaacagcacgtccagtaccccatgattcagctgaggtttggtggccagctttacggctgacagcgtagggct |
126 |
Q |
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| T |
17027080 |
ccacctccggcaacacgaggaatacgagaaacggcacggccagttccccatgactcggcggaggtttggtgaccggctttacggctcacggcgtagggtt |
17026981 |
T |
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| Q |
127 |
gtcgggagtttttggaaatgttggaatggacgaaattgacgatgtcaggacggattgaagcacgcatgacatcggggattggaagggtggtcggtgaatc |
226 |
Q |
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| T |
17026980 |
gccgggagtttttggaaatgttggagtggacaaagttaacgatatcgggacggattgaagctcgcattacatcgggaattgggagggtagtttgtgaatc |
17026881 |
T |
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| Q |
227 |
ggtggacatttccgattctagggtttggattgtgacaagggg |
268 |
Q |
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| T |
17026880 |
ggtggccatgtcggaatcgagtgtttggacggtgacgagggg |
17026839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 28814746 - 28814932
Alignment:
| Q |
27 |
ccaccaccagcaacacgaggaatacgtgaaacagcacgtccagtaccccatgattcagctgaggtttggtggccagctttacggctgacagcgtagggct |
126 |
Q |
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||||| || ||||||||||||||||| || ||||||||||| |||||||| || || ||||||||||| ||||||||||| |||||||| ||||| || | |
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| T |
28814746 |
ccacctccggcaacacgaggaatacgggatacagcacgtccggtaccccaggactcggctgaggtttgatggccagctttgcggctgacggcgtatggtt |
28814845 |
T |
|
| Q |
127 |
gtcgggagtttttggaaatgttggaatggacgaaattgacgatgtcaggacggattgaagcacgcatgacatcggggattggaaggg |
213 |
Q |
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| |||| ||||||||| |||||||| |||||||| |||||||| || |||||||| | |||||||||||||| |||| ||| |||| |
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| T |
28814846 |
gacgggcgtttttggagatgttggagtggacgaagttgacgatatcgggacggatggcggcacgcatgacatcagggactgggaggg |
28814932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 22056887 - 22056938
Alignment:
| Q |
326 |
tttttgcgggag-gctactgctaagtgtgtgagaagaagggtctgttttgtg |
376 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||| |||| |||| |
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| T |
22056887 |
tttttgcgagagtgctactgctaagtgtgtgagaagaagggtttgttctgtg |
22056938 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 4380492 - 4380548
Alignment:
| Q |
175 |
gacggattgaagcacgcatgacatcggggattggaagggtggtcggtgaatcggtgg |
231 |
Q |
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||||||||||| | ||||| |||||||||||||| |||||||| | |||||| |||| |
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| T |
4380492 |
gacggattgaaactcgcattacatcggggattgggagggtggtggatgaatccgtgg |
4380548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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