View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_25 (Length: 345)
Name: NF4458_high_25
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 115 - 330
Target Start/End: Original strand, 8463186 - 8463400
Alignment:
| Q |
115 |
ctacctataacatatcatatggtgataaataaaacataattataaagaaacagtctcaaagagcttatagtcgttaaattcaatattttatcatctcttt |
214 |
Q |
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| T |
8463186 |
ctacctataacatatcatatgttgttaaataaaacataattataaagaaacagtctcaaagagcttatagtcattaaattcaatattttatcatctcttt |
8463285 |
T |
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| Q |
215 |
aattgaccaaaactatataaagctaaggagtgaagcaagcaaatgacaaatattacaattactacaagaaaatacgacatggttcgtttttcatcaatta |
314 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
8463286 |
aattgaccaaaa-tatataaagctaaggagtgaagcaagcaaatgacaaatattacaattactacaagaaaatacaatatggttcgtttttcatcaatta |
8463384 |
T |
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| Q |
315 |
ccattatgtttctttt |
330 |
Q |
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|||||||||||||||| |
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| T |
8463385 |
ccattatgtttctttt |
8463400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 8449727 - 8449899
Alignment:
| Q |
158 |
aaagaaacagtctcaaagagcttatagtcgttaaattcaatattttatcatctctttaattgaccaaaactatataaagctaaggagtgaagcaagcaaa |
257 |
Q |
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||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8449727 |
aaagaaaaagtctcaaagtgcttatagtaattaaattcaatattttatcatctttttaattaaccaaaactatataaagctaaggagtgaagcaagcaaa |
8449826 |
T |
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| Q |
258 |
tgacaaatattacaattactacaagaaaatacgacatggttcgtttttcatcaattaccattatgtttctttt |
330 |
Q |
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| T |
8449827 |
tgaccaatattacaattactacaagaaaatacaacatggttcgtttttcatcaattaccattatgtttctttt |
8449899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 8458531 - 8458703
Alignment:
| Q |
158 |
aaagaaacagtctcaaagagcttatagtcgttaaattcaatattttatcatctctttaattgaccaaaactatataaagctaaggagtgaagcaagcaaa |
257 |
Q |
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||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8458531 |
aaagaaaaagtctcaaagtgcttatagtaattaaattcaatattttatcatctttttaattaaccaaaactatataaagctaaggagtgaagcaagcaaa |
8458630 |
T |
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| Q |
258 |
tgacaaatattacaattactacaagaaaatacgacatggttcgtttttcatcaattaccattatgtttctttt |
330 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8458631 |
tgaccaatattacaattactacaagaaaatacaacatggttcgtttttcatcaattaccattatgtttctttt |
8458703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 8637979 - 8638061
Alignment:
| Q |
192 |
attcaatattttatcatctctttaattgaccaaaactatataaagctaaggagtgaagcaagcaaatgacaaatattacaatt |
274 |
Q |
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| T |
8637979 |
attcaatattttatcaagttttcaattgatgagaactatataaagctaatgagtgaagcaagcaaatggcaaatattaaaatt |
8638061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 8634270 - 8634221
Alignment:
| Q |
225 |
aactatataaagctaaggagtgaagcaagcaaatgacaaatattacaatt |
274 |
Q |
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|||| ||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
8634270 |
aactctataaagctaaagagtgaagcaagcaaatggcaaatattacaatt |
8634221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 1146496 - 1146544
Alignment:
| Q |
48 |
gtagtggccggaatttgaataccgaacgttacatattttatgcattgtc |
96 |
Q |
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|||||||||| ||||||| ||||||| ||| ||||||||||||||||| |
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| T |
1146496 |
gtagtggccgagatttgaacaccgaaccttatatattttatgcattgtc |
1146544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 16475645 - 16475693
Alignment:
| Q |
48 |
gtagtggccggaatttgaataccgaacgttacatattttatgcattgtcc |
97 |
Q |
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|||||||| |||||||||| |||||| |||||||||||||||||||||| |
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| T |
16475645 |
gtagtggctggaatttgaaccccgaac-ttacatattttatgcattgtcc |
16475693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 17917141 - 17917177
Alignment:
| Q |
61 |
tttgaataccgaacgttacatattttatgcattgtcc |
97 |
Q |
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||||||| |||||| |||||||||||||||||||||| |
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| T |
17917141 |
tttgaatcccgaaccttacatattttatgcattgtcc |
17917177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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