View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_31 (Length: 304)
Name: NF4458_high_31
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 43170216 - 43170397
Alignment:
| Q |
97 |
ttatgttaaagttggtcagtcatcttgagttacctgtaagaaaagtgagctacttatcggattttgtgcaaccacctcattgtcgaccatgatgcaaaag |
196 |
Q |
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| T |
43170216 |
ttatgttaaagttggtcagtcatcttgagttacctgtaagaaaagtgagctgcttatcggattttgcgcaaccaccttaatgtcgaccatgatgcaaaag |
43170315 |
T |
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| Q |
197 |
ggaaataaaatacattgatactgctagaagttgaaatgcagcgttgcaaatgacacatttatagtgttgtgcagagtttgtt |
278 |
Q |
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| T |
43170316 |
ggaaataaaatacattgatgctgctagaagttgaaatgcagcgttacaaatgacacatttatagtgttgtgcagagtttgtt |
43170397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43170148 - 43170209
Alignment:
| Q |
1 |
aaaatcaaaatacttataaccacatgttcaaccagaaatcttataccggtactggtgggaat |
62 |
Q |
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| T |
43170148 |
aaaataaaaatacttataaccacatgttcaaccagaaatcttataccggtactggtgggaat |
43170209 |
T |
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