View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4458_high_41 (Length: 251)
Name: NF4458_high_41
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 14865039 - 14865266
Alignment:
| Q |
11 |
acagcatctatatttcttgctccaatgctgccctttctggatctatagcagaacccggaggatgactatgactgtagataggtttcctgcggtgtatatc |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14865039 |
acagcatctctatttcttgctccaatgctgccctttctggatctatagcagaagccggaggatgactatgactgtggataggtttcctgcggtgtatatc |
14865138 |
T |
|
| Q |
111 |
cttcagaagatgtttttgatcttttgtaaatttttcattggcaaactcccaacgatcaggatctgcttttcgaaatccctgataaaaagcacacatgaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14865139 |
cttcagaagatgtttttgatcttttgtaaatttttcattggcaaactcccaacgatcaggatctgcttttcgaaatccctgataaaaagcacacatgaat |
14865238 |
T |
|
| Q |
211 |
aaaccataacaaattaaaacatacattc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14865239 |
aaaccataacaaattaaaacatacattc |
14865266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 15323011 - 15323186
Alignment:
| Q |
21 |
tatttcttgctccaatgctgccctttctggatctatagcagaacccggaggatgactatgactgtagataggtttcctgcggtgtatatccttcagaaga |
120 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| | || |||| |||||||||||| ||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
15323011 |
tatttcttgctccaatgctgcctttttcggatctacaccataacctcgaggatgactataactgtggataggtttcctgcggtgtatattcttcaaaaga |
15323110 |
T |
|
| Q |
121 |
tgtttttgatcttttgtaaatttttcattggcaaactcccaacgatcaggatctgcttttcgaaatccctgataaa |
196 |
Q |
| |
|
| | || |||||| |||||| ||||| || |||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
15323111 |
tatgttggatcttcaataaattcttcatcggaaaactcccaacgatcaggatctgctttttgaaacccctgataaa |
15323186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 15353197 - 15353325
Alignment:
| Q |
68 |
gaggatgactatgactgtagataggtttcctgcggtgtatatccttcagaagatgtttttgatcttttgtaaatttttcattggcaaactcccaacgatc |
167 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||| |||||||| ||||||| ||||||| |
|
|
| T |
15353197 |
gagggtgactatgcttgtggataggtttcctgtggtgtatattcttcagaagatatttttgatcttttataaattcttcattgggaaactcctaacgatc |
15353296 |
T |
|
| Q |
168 |
aggatctgcttttcgaaatccctgataaa |
196 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |
|
|
| T |
15353297 |
aggatctgctttttgaaatccatgataaa |
15353325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 35146060 - 35145841
Alignment:
| Q |
21 |
tatttcttgctccaatgctgccctttctggatctatagcagaacccggaggatgactatgactgtagataggtttcctgcggtgtatatccttcagaaga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
35146060 |
tatttcttgctccaatgctgccctttctggatctacagcagaacccggaggatgactatgactgtggataggtttcctgcggtgtatattcttcagaaga |
35145961 |
T |
|
| Q |
121 |
tgtttttgatcttttgtaaatttttcattggcaaactcccaacgatcaggatctgcttttcgaaatccctgataaaaagcacacatgaataaaccataac |
220 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
35145960 |
tgtttttgatctttgataaattcttcattggcaaactcccaacgctcaggatctgcttttcgaaatccctgataaaaagcacatataaataaaccataag |
35145861 |
T |
|
| Q |
221 |
aaattaaaacatacattcat |
240 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35145860 |
aaattaaaacatacattcat |
35145841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 43283555 - 43283762
Alignment:
| Q |
21 |
tatttcttgctccaatgctgccctttctggatctatagcagaacccggaggatgactatgactgtagataggtttcctgcggtgtatatccttcagaaga |
120 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
43283555 |
tatttctttctcaaaagctgccctttctggatcaacagcagaacccggaggatgactatgactgtggataggtttcctacggtgtatattcttcaaaaga |
43283654 |
T |
|
| Q |
121 |
tgtttttgatcttttgtaaatttttcattggcaaactcccaacgatcaggatctgcttttcgaaatccctgataa-aaagcacacatgaataaaccataa |
219 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||| || | ||| ||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
43283655 |
tgtttttgatcttttataaattcctcattagcaaactcccaacgctccgaatccttttttcgaaatccctgataataaagcacacataaataaacaataa |
43283754 |
T |
|
| Q |
220 |
caaattaa |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
43283755 |
caaattaa |
43283762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 43278615 - 43278830
Alignment:
| Q |
21 |
tatttcttgctccaatgctgccctttctggatctatagcagaacccggaggatgactatgactgtagataggtttcctgcggtgtatatccttcagaaga |
120 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| | || ||||| |||||||||| |
|
|
| T |
43278615 |
tatttcttcctctaaagctgccctttctggatcaacagcagaacccggaggatgactatgactgtggataggtttcctacagtctatattcttcagaaga |
43278714 |
T |
|
| Q |
121 |
tgtttttgatcttttgtaaatttttcattggcaaactcccaacgatcaggatctgcttttcgaaatccctgataa-aaagcacacatgaataaaccataa |
219 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||||||| ||||| || | ||| ||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
43278715 |
tgtttttgatcttttataaattcttcattagcaaactcgcaacgctctgaatcaatttttcgaaatccctgataataaagcacacataaatataccataa |
43278814 |
T |
|
| Q |
220 |
caaattaaaacataca |
235 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
43278815 |
cagattaaaacctaca |
43278830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University