View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_42 (Length: 247)
Name: NF4458_high_42
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 16233331 - 16233527
Alignment:
| Q |
48 |
taaactacaagagaaagaggaatctgcgctgaaaccctagaattcggaaggaagagaaagaggattttgcgaagcacaaaccctaggattcggagggaag |
147 |
Q |
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| T |
16233331 |
taaactacaagagaaagaggaatctgcgctgaaaccctagaattcggaaggaagagaaagaggattttgcgaagcacaaaccctaggattcggagggaag |
16233430 |
T |
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| Q |
148 |
agaaagacgatttcgcgataatttggtgtggtttggaataagcaaggtgttatgcg--------tttttattttattccttagtttttctaattcat |
236 |
Q |
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| T |
16233431 |
agaaagacgatttcgcgataatttggtgtggtttggaataagcaaggtgttatgcgtttttatatttttattttattccttagtttttctaattcat |
16233527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 16233293 - 16233330
Alignment:
| Q |
21 |
aaaaccacatagacacttcagcatcattaaactacaag |
58 |
Q |
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| T |
16233293 |
aaaaccacatagacacttcagcatcattaaactacaag |
16233330 |
T |
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