View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_45 (Length: 236)
Name: NF4458_high_45
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 41234608 - 41234812
Alignment:
| Q |
15 |
atgaagagaggtagagaagataagagtgagttaaattgtttgatgctactatccaaagttggtgaaacaaaagagcctaatacattgaaagaatgtggtt |
114 |
Q |
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| T |
41234608 |
atgaagagaggtagagaagataagagtgagttaaattgtttgatgctactatccaaagttggtgaaacaaaagagcctaatacattgaaagaatgtggtt |
41234707 |
T |
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| Q |
115 |
ttaagtgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaactcatgtacaagttaccaaa |
214 |
Q |
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| T |
41234708 |
ttaagtgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaactcatgtacaagttaccaaa |
41234807 |
T |
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| Q |
215 |
catga |
219 |
Q |
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||||| |
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| T |
41234808 |
catga |
41234812 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 40689687 - 40689761
Alignment:
| Q |
120 |
tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaa |
194 |
Q |
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| T |
40689687 |
tgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaa |
40689761 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 40243844 - 40243776
Alignment:
| Q |
120 |
tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagaga |
188 |
Q |
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| T |
40243844 |
tgcaaaacgtgcaacaaaaaattctcatcttttcaagcccttggtggccatagggctagccacaagaga |
40243776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 9612909 - 9612877
Alignment:
| Q |
152 |
tcaagctttaggtggccatagagcaagtcacaa |
184 |
Q |
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| T |
9612909 |
tcaagcattaggtggccatagagcaagtcacaa |
9612877 |
T |
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