View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_48 (Length: 230)
Name: NF4458_high_48
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 49254882 - 49254651
Alignment:
| Q |
1 |
tgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgtt |
100 |
Q |
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| T |
49254882 |
tgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgtt |
49254783 |
T |
|
| Q |
101 |
atgcttcttgaac---caccctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatat |
184 |
Q |
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| T |
49254782 |
atgcttcttgaaccagcaccctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatat |
49254683 |
T |
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| Q |
185 |
tgggatttgaatacgttggtggaagttgagatt |
217 |
Q |
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| T |
49254682 |
t-ggatttgaatacgttggtggaagttgagatt |
49254651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 49267144 - 49266985
Alignment:
| Q |
1 |
tgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgtt |
100 |
Q |
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||||||||||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49267144 |
tgaaataatttgtagaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgtt |
49267045 |
T |
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| Q |
101 |
atgcttcttgaaccaccctctgtgtctttctctaacaaacctttatccatattttctagc |
160 |
Q |
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| T |
49267044 |
atgcttcttgaatcaccttctctgtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 49271550 - 49271447
Alignment:
| Q |
1 |
tgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| | |
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| T |
49271550 |
tgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgat |
49271451 |
T |
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| Q |
101 |
atgc |
104 |
Q |
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|||| |
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| T |
49271450 |
atgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 49274694 - 49274761
Alignment:
| Q |
1 |
tgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
49274694 |
tgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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