View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_high_53 (Length: 214)

Name: NF4458_high_53
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_high_53
NF4458_high_53
[»] chr6 (7 HSPs)
chr6 (17-204)||(14864751-14864938)
chr6 (24-204)||(15353720-15353900)
chr6 (24-190)||(15373306-15373472)
chr6 (24-204)||(15322720-15322900)
chr6 (24-190)||(15323596-15323762)
chr6 (54-204)||(15373921-15374071)
chr6 (41-204)||(15352894-15353057)
[»] chr8 (1 HSPs)
chr8 (24-204)||(35146171-35146351)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 14864751 - 14864938
Alignment:
Q  17 aactgcaaggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatgga 116  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14864751 aactgcaaggattgtcaagaaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagctgccaaatccatgga 14864850  T
Q  117 ttcgattttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  14864851 ttcgattttgcgggaaagaagttccacaataaaagaatcctgaagagccttgtcaaagaaagtctgcaaatttgcctgcctctgctcc 14864938  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 15353900 - 15353720
Alignment:
Q  24 aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt 123  Q
    ||||||||||| |||  |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||||| |    
T  15353900 aggattgtcaaccaagctaccttcggcaacaggctgcatgtgatcaacctgagacaatcgccttttcttattataagcttccaaatccatggattcgaat 15353801  T
Q  124 ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc 204  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||| ||||    
T  15353800 ttgccggaaagaagttcaacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctcc 15353720  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 15373306 - 15373472
Alignment:
Q  24 aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt 123  Q
    ||||||||||| |||  |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |    
T  15373306 aggattgtcaaccaagctaccttcggcaacaggctgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggattcgaat 15373405  T
Q  124 ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttg 190  Q
    |  | |||||||||||| |||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  15373406 tatccggaaagaagttcaacaataaaagaatcctgaagagccttttcaaagaagttctgcaaatttg 15373472  T

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Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 15322720 - 15322900
Alignment:
Q  24 aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt 123  Q
    ||||| ||||| |||  |||||||| ||||| |||| ||  ||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| |    
T  15322720 aggatggtcaaccaatctaccttcggcaacaagctgcatctgatcaacctgagacaatcgccttttcttattataagctgccaaatccttggattcgaat 15322819  T
Q  124 ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc 204  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||| ||||    
T  15322820 ttgccggaaagaagttcaacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctcc 15322900  T

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Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 15323762 - 15323596
Alignment:
Q  24 aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt 123  Q
    ||||||||||| |||  |||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |    
T  15323762 aggattgtcaaccaagctaccttcggcaacaggttgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggatccgaat 15323663  T
Q  124 ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttg 190  Q
    |||  |||||||||||| |||||||||||||| |||||| |||||||||||||  ||||||||||||    
T  15323662 ttgtcggaaagaagttcaacaataaaagaatcttgaagaaccttctcaaagaagttctgcaaatttg 15323596  T

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Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 15374071 - 15373921
Alignment:
Q  54 aggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttccacaataaaagaa 153  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||||| ||||||||||||    
T  15374071 aggctgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggattcgaattttccggaaagaagttcaacaataaaagaa 15373972  T
Q  154 tcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc 204  Q
    || ||||||| ||||||||||||  |||||||||||| ||| |||| ||||    
T  15373971 tcttgaagaggcttctcaaagaagttctgcaaatttgtctgcctcttctcc 15373921  T

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Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 15352894 - 15353057
Alignment:
Q  41 taccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttc 140  Q
    |||||||| ||||| |||| ||  ||||||| | ||||||||||||||||||||||| ||  ||||||||| ||||||||| ||||| ||||||||||||    
T  15352894 taccttcggcaacaagctgcatttgatcaacataagacaatcgccttttcttattataagcagccaaatccttggattcgaatttgccggaaagaagttc 15352993  T
Q  141 cacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc 204  Q
     |||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||| ||||    
T  15352994 aacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctcc 15353057  T

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Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 35146351 - 35146171
Alignment:
Q  24 aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt 123  Q
    ||||||||||| |||  |||||||| |||||||||| |   |||||||||||| |||||||||||||||||||| || |||||||||||||||||| |||    
T  35146351 aggattgtcaaccaagctaccttcggcaacaggctgcacctgatcaacctgaggcaatcgccttttcttattataagctgccaaatccatggattcaatt 35146252  T
Q  124 ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc 204  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||| ||| |||| ||||    
T  35146251 ttgcgggaaagaagttcaacaataaaagaatcttgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctcc 35146171  T

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