View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_high_54 (Length: 212)

Name: NF4458_high_54
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_high_54
NF4458_high_54
[»] chr3 (1 HSPs)
chr3 (15-81)||(36437665-36437731)
[»] chr6 (1 HSPs)
chr6 (15-81)||(5859353-5859419)
[»] chr4 (1 HSPs)
chr4 (15-81)||(16313094-16313160)
[»] scaffold0197 (1 HSPs)
scaffold0197 (32-81)||(29225-29274)


Alignment Details
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 36437731 - 36437665
Alignment:
Q  15 cagagagaataacggtttttatgttgatgatttggggaaaacatagatcttgaaaaggggtttcaat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36437731 cagagagaataacggtttttatgttgatgatttggggaaaacatagatcttgaaaaggggtttcaat 36437665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 5859419 - 5859353
Alignment:
Q  15 cagagagaataacggtttttatgttgatgatttggggaaaacatagatcttgaaaaggggtttcaat 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5859419 cagagagaataacggtttttatgttgatgatttggggaaaacatagatcttgaaaagggatttcaat 5859353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 16313160 - 16313094
Alignment:
Q  15 cagagagaataacggtttttatgttgatgatttggggaaaacatagatcttgaaaaggggtttcaat 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16313160 cagagagaataacggtttttatgttgatgatttggggaaaacatagatcttgaaaagggatttcaat 16313094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 29274 - 29225
Alignment:
Q  32 tttatgttgatgatttggggaaaacatagatcttgaaaaggggtttcaat 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29274 tttatgttgatgatttggggaaaacatagatcttgaaaaggggtttcaat 29225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University