View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_6 (Length: 558)
Name: NF4458_high_6
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Complemental strand, 36087855 - 36087311
Alignment:
| Q |
8 |
atagtacatgagtatttttcttagtcctcggtatttaggggatgagattcagaaactcgtgaattcattttggtggggctggggtggaaacaacgagagc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36087855 |
atagtacatgagtatttttcttagtcctcggtatttaggggatgagattcagaaactcgtgaattcattttggtggggctggggtggaaacaatgagagc |
36087756 |
T |
|
| Q |
108 |
ggtaaactagctttaaggagacaattttcaatgcgaaatggtttttatcatgacaatcagtctcacgaaccatcacgagtgatcttgcccagttcgaagt |
207 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36087755 |
ggtaaactagctttaaggagacaattttcaatgggaaatggtttttatcgtgacaatcagtctcacgaaccatcacgagtgatcttgcccagttggaagt |
36087656 |
T |
|
| Q |
208 |
caattcttcaatttcatttttaactactcttgtatggttagtggaagatatttaatagtattcagctattcttgacaaattcgct--------------- |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36087655 |
caattcttcaatttcatttttaactactcttgtatggttagtggaagatatttaatagtatttagctattcttgacaaattcgctatatttgtcatcgct |
36087556 |
T |
|
| Q |
293 |
atatatagaattgcccattttcaattagtaagtctcatggtgaaatgggctttcgtaacttgtatgactctcaaggccggcattgtgcaagtgcaacaag |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36087555 |
atatatagaattgcccattttcaattagtaagtctcatggtgaaatgggctttcgtaacttgtatgactctcaaggccggcatcgtgcaagtgcaacaag |
36087456 |
T |
|
| Q |
393 |
gcctttgacacagggcctcaaatataggggactcaaaatttttaaaaaggnnnnnnnnnnnnntcttgtacctacgatgaatatccgtcactaaatatcc |
492 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||| |
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| T |
36087455 |
gcctttgacagagggcctcaaatataggggactcaaaattttaaaaaaggaaaaaaatat-----ttgtacctacgatgaatatctgtcactaaatgtcc |
36087361 |
T |
|
| Q |
493 |
tttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatg |
542 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||||| |||| |||||| |
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| T |
36087360 |
tttttccgtaggtgaaagtctgaaagacaacaattttgttgtcgattatg |
36087311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 479 - 542
Target Start/End: Original strand, 36855236 - 36855299
Alignment:
| Q |
479 |
gtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatg |
542 |
Q |
| |
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|||||||||| |||||||||||||| | ||||||||||| ||| |||||||||||||||||||| |
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| T |
36855236 |
gtcactaaatgtcctttttccgtaggtaaaagtctgaaagacagcaattttgctgtcaattatg |
36855299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 10240776 - 10240727
Alignment:
| Q |
493 |
tttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatg |
542 |
Q |
| |
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||||||| || || ||||||||||| ||| |||||||||||||||||||| |
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| T |
10240776 |
tttttccatacataaaagtctgaaagacagcaattttgctgtcaattatg |
10240727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 553
Target Start/End: Original strand, 12697410 - 12697482
Alignment:
| Q |
480 |
tcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgatgatgtccat |
553 |
Q |
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||||||||| | |||| |||||| | ||||| ||||| ||||||||||| |||||||||||| |||||||||| |
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| T |
12697410 |
tcactaaatgttgttttaccgtaggtaaaagtttgaaagacaacaattttactgtcaattatg-tgatgtccat |
12697482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 542
Target Start/End: Complemental strand, 35195422 - 35195354
Alignment:
| Q |
474 |
tatccgtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatg |
542 |
Q |
| |
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||||||||| |||||||| |||||| |||| | || |||| ||| ||||||||| || ||||||||||| |
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| T |
35195422 |
tatccgtcattaaatatcttttttctgtaggtaaatgtctaaaatacaacaattatgatgtcaattatg |
35195354 |
T |
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