View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_high_9 (Length: 524)
Name: NF4458_high_9
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_high_9 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 205 - 524
Target Start/End: Complemental strand, 40743726 - 40743407
Alignment:
| Q |
205 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacacataagagatgcttctaagagatgatgtgccattaaaacctcctctgttg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
40743726 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtgccattagaacttcctctgttg |
40743627 |
T |
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| Q |
305 |
gattaaccatgccagcatccattgaacgtttatggattttgagtatagtatatatggtggaaccaaatacaataaatacagtggttgctatagtttttat |
404 |
Q |
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| T |
40743626 |
gattaaccatgccagcatccattgaacgtttatggattttgagtatagtatatatggtggaaccaaatacaataaatacagtggttgctatagtttttat |
40743527 |
T |
|
| Q |
405 |
gattaatggaccccttccacgcttcaaaaggtctaacaccttcaccattaattttcgtattggatttgcaaaagatagtgttagaattactgttagttct |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40743526 |
gattaatggaccccttccacgcttcaaaaggtctaacaccttcaccattaattttcgtattggatttgcaaaagatagtattagaattactgttaattct |
40743427 |
T |
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| Q |
505 |
attgacaaaagtgcaaataa |
524 |
Q |
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|||||||||||||||||||| |
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| T |
40743426 |
attgacaaaagtgcaaataa |
40743407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 205 - 524
Target Start/End: Complemental strand, 40756242 - 40755923
Alignment:
| Q |
205 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacacataagagatgcttctaagagatgatgtgccattaaaacctcctctgttg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
40756242 |
aaatgcaagtattgaaagaaaaataaggaaatatttaagagtaatttacccataagagatgcttctaagagatgatgtgccattagaacttcctctgttg |
40756143 |
T |
|
| Q |
305 |
gattaaccatgccagcatccattgaacgtttatggattttgagtatagtatatatggtggaaccaaatacaataaatacagtggttgctatagtttttat |
404 |
Q |
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| T |
40756142 |
gattaaccatgccagcatccattgaacgtttatggattttgagtatagtatatatggtggaaccaaatacaataaatacagtggttgctatagtttttat |
40756043 |
T |
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| Q |
405 |
gattaatggaccccttccacgcttcaaaaggtctaacaccttcaccattaattttcgtattggatttgcaaaagatagtgttagaattactgttagttct |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40756042 |
gattaatggaccccttccacgcttcaaaaggtctaacaccttcaccattaattttcgtattggatttgcaaaagatagtattagaattactgttaattct |
40755943 |
T |
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| Q |
505 |
attgacaaaagtgcaaataa |
524 |
Q |
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|||||||||||||||||||| |
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| T |
40755942 |
attgacaaaagtgcaaataa |
40755923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 40756413 - 40756295
Alignment:
| Q |
40 |
aggagttttcatatatttgttataaaaaaatttacnnnnnnnnnn-ataagaatcagaaagnnnnnnnnnnttaaaattgtatcaaataagaagttgtgt |
138 |
Q |
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| T |
40756413 |
aggagttttcatatatttgttataaaaaaatttactttttttttttataagaatcagaaagaaaaaaaaaattaaaattgtatcaaataagaagttgtgt |
40756314 |
T |
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| Q |
139 |
tgagtggcttctcttgaag |
157 |
Q |
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||||| ||||||||||||| |
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| T |
40756313 |
tgagtagcttctcttgaag |
40756295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 40743928 - 40743870
Alignment:
| Q |
11 |
aatgaattgtccaac----aatatgtcatttttaggagttttcatatatttgttataaa |
65 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
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| T |
40743928 |
aatgaattgtccaaccatgaatatgtcctttttaggagttttcatctatttgttataaa |
40743870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 40743816 - 40743778
Alignment:
| Q |
119 |
tatcaaataagaagttgtgttgagtggcttctcttgaag |
157 |
Q |
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| T |
40743816 |
tatcaaataagaagttgttttgagtagcttctcttgaag |
40743778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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