View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_1 (Length: 666)
Name: NF4458_low_1
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 15 - 626
Target Start/End: Original strand, 49064411 - 49065022
Alignment:
| Q |
15 |
gagggagaattcatttgaaagaaaaaggtagtataagatgcaaagggaaacgtcaacaacgaatggggacatggtgtccttgctgatagacgtttaagta |
114 |
Q |
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| T |
49064411 |
gagggagaattcatttgaaagaaaaaggtagtataagatgcaaagggaaacgtcaacaacgaatggggacatggtgtccttgctgatagacgtttaagta |
49064510 |
T |
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| Q |
115 |
cataagaagtttgtttggtattggtaacattcatgtacatgacaaaccataatgtttggctctgtctccnnnnnnnatcatgcgtgattgcatcacttat |
214 |
Q |
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| T |
49064511 |
aataagaagtttgtttggtattggtaacattcatgtacatgacaaaccataatgtttggctctgtctcctttttttatcatgcgtgattgcatcacttat |
49064610 |
T |
|
| Q |
215 |
ttttggtcctcttgatacgcccaaaggccaacaccaaacgataccttattgctcaattccaagactataatgcctcaaatacaatatatgtctgtctcta |
314 |
Q |
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| T |
49064611 |
ttttggtcctcttgatacgcccaaaggccaaaaccaaacgataccttattgctcaattccaagactataatgcctcaaatacaatatatgtctgtctcta |
49064710 |
T |
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| Q |
315 |
tacgagcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactcgactactacttgtttgtgttgtgggccatttttatcaatgcat |
414 |
Q |
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| T |
49064711 |
tacgagcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactcgactactacttgtttgtgttgtgggccatttttatcaatgcat |
49064810 |
T |
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| Q |
415 |
gagtctttgtctatccagccacccacacggtcatactcatctacagaattttcaatctcaatcaaaactatttgttactatatgaagcacaacaattcca |
514 |
Q |
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| T |
49064811 |
gagtctttgtctatccagccacccacacggtcatactcatctacagaattttcaatctcaatcaaaactatttgttactatatgaagcacaacaattcca |
49064910 |
T |
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| Q |
515 |
ttaatttttctgacatttgaaaaaacataaatttaaccttatattaaaaagaatacatcacgtgtaaaactcctatatactttttaaaggtaagtgcagc |
614 |
Q |
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| T |
49064911 |
ttaatttttctgacatttgaaaaaacataaatttaaccttatattaaaaagaatacatcacgtgtcaaactcctatatactttttaaaggtaagtgtagc |
49065010 |
T |
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| Q |
615 |
agctattacccc |
626 |
Q |
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| T |
49065011 |
agctattacccc |
49065022 |
T |
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