View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_13 (Length: 469)
Name: NF4458_low_13
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 9221939 - 9222400
Alignment:
| Q |
1 |
tccccctatttctaatcataaaagtttggtccccc-tttcatttgatgacgtactaataaattgttcactttaaaccttttgtatcatttcaattgatct |
99 |
Q |
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|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
9221939 |
tccccctatttctaatcatagaattttggtcccccgtttcatttgatgacgtactaataaattgttcattctaaaccttttgtatcatttcaattgatct |
9222038 |
T |
|
| Q |
100 |
tcttttgaccatgtatgtttggtcacgacttagtttaagcctctacttttgacaactcaacaattaagttttcgtttcatgtcaggtcacacattatatt |
199 |
Q |
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| T |
9222039 |
tcttttgactatgtatgtttggtcacgacttagtttaagcctctacttttgacgactcaacaattaagttttcgtttcttgtcaggtcacacattatatt |
9222138 |
T |
|
| Q |
200 |
gtcacttttttaaactcaatgattaaaatcatagattggataaaatttcagaaatggatggatcaaaactaaatttaaaccaaatttaaaaatgtcttaa |
299 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9222139 |
gtcacttttttaaactcaatgattaaaatcgtagattggataaaatttcagaaatggagggatcaaaactaaatttaaaccaaatttaaaaatgtcttaa |
9222238 |
T |
|
| Q |
300 |
ttttgtctatcaacaaactttattactgcctttccgcggtaagtttggcatatgtggaagctgaaacctttgcctaaaggaatgtgtatagtgttccatt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9222239 |
ttttgtctatcaacaaactttattactgcctttccgcggtaagtttggcatatgtggaagctgaaacctttgcctaaaggaatgtgtatagtgttccatt |
9222338 |
T |
|
| Q |
400 |
ctgcacatgaaagaaattttataagattaaagataattttgtgcttaagtaaatgatgatgt |
461 |
Q |
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| T |
9222339 |
ctgcacatgaaagaaattttataagattaaggataattttgtgcttaagtaaatgattatgt |
9222400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 10565644 - 10565594
Alignment:
| Q |
55 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttctttt |
105 |
Q |
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||||||||||||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
10565644 |
aataaattgttcactctcaacctcttgtatcatttcaattgatcttctttt |
10565594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 33333904 - 33333839
Alignment:
| Q |
55 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttcttttgaccatgtatgtttg |
120 |
Q |
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||||||||||| |||| ||||| ||||||||||||||||||||||||||| || |||||| |||| |
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| T |
33333904 |
aataaattgtttacttccaacctcttgtatcatttcaattgatcttcttttaactatgtatatttg |
33333839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 33971160 - 33971208
Alignment:
| Q |
59 |
aattgttcactttaaaccttttgtatcatttcaattgatcttcttttga |
107 |
Q |
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| T |
33971160 |
aattgttcactctaatccccttttatcatttcaattgatcttcttttga |
33971208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 50815184 - 50815234
Alignment:
| Q |
55 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttctttt |
105 |
Q |
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||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |
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| T |
50815184 |
aataaattgttcattttcaaccttttatatcattttaattgatcttctttt |
50815234 |
T |
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