View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_18 (Length: 428)
Name: NF4458_low_18
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 9222795 - 9222390
Alignment:
| Q |
13 |
tcataattctatatggtctaaatttttatctatctcatcatatgagtttaaactttaaattgatataaaagacgtggttggaaggaaagaatacactaaa |
112 |
Q |
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| T |
9222795 |
tcataattctatatggtctaaatttttatctatctcatcgtatgagtttaaactttaaattgatataaaagacgtggttggaaggaaagaatacactaaa |
9222696 |
T |
|
| Q |
113 |
gtggtcaggtttctcaaccgagattagtcatccctaatatgcgtggcataaactatcacattcacaattatcaacnnnnnnnn-tctaatttgtcttatg |
211 |
Q |
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| T |
9222695 |
gtggtctggtttctcgaccgagattagtcatccgtaatatgtgtggcataaactatccaattcacaatcatcaacaaaaaaaaatataatttgtcttatg |
9222596 |
T |
|
| Q |
212 |
gttcataatctaattcatattgttttatggttcatccttttttgcattgcagcaagtgttggaattcttttctcatttgatacgtttatttggtgacaac |
311 |
Q |
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| T |
9222595 |
gttcataatctaattcatattgttttatggttcatccttttttgcattgcagcaagtgttggaattcttttctcatttgatacgtttatttggtgacaac |
9222496 |
T |
|
| Q |
312 |
attcaaattgtggtgaaacccactcttcatgacggcatgaatgttggggtccattggaaatttggtaaatcataatcatattctctcctctcatgtacat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
9222495 |
attcaaattgtggtgaaacccactcttcatgacggcatgaatgttggggtccattggaaatttggtaaatcataatcataatctctcctctc-tgtacat |
9222397 |
T |
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| Q |
412 |
aatcatt |
418 |
Q |
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| T |
9222396 |
aatcatt |
9222390 |
T |
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