View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_low_2 (Length: 655)

Name: NF4458_low_2
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_low_2
NF4458_low_2
[»] scaffold0148 (1 HSPs)
scaffold0148 (17-639)||(27445-28073)
[»] scaffold0280 (1 HSPs)
scaffold0280 (93-225)||(2485-2617)


Alignment Details
Target: scaffold0148 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 17 - 639
Target Start/End: Original strand, 27445 - 28073
Alignment:
Q  17 atgaataaaaggaatcttcagaatcatgaatttgtttctaattttatatnnnnnnnnnngaagagagaaatatgtctctaatttaatcatcatatgcata 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  27445 atgaataaaaggaattttcagaatcatgaatttgtttctaattttatataaaaaaagaagaagagagaaatatgtctctaatttaatcatcatatgcata 27544  T
Q  117 cctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtagttaaactttgtgtccagatccaac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27545 cctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtagttaaactgtgtgtccagatccaac 27644  T
Q  217 agtttgaaggaataagaccacgcagctgcttatcagggacctgagcatatgagtaagcctggcactg------tggacacatcccatggcacaaatctgc 310  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||      |||||||||||||||||||||||||||    
T  27645 agtttgaaggaataagaccacgctgctgcttatcagggacttgagcatatgagtaagcctggcactgtgactgtggacacatcccatggcacaaatctgc 27744  T
Q  311 gcatttttcttgagattccacggttgcctttttatctggctttcctggtttaatcatggtcaagttcaagaacttcatgtcattttcagaacagaatgtt 410  Q
    |||||||| |||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  27745 gcattttttttgagattccacggttacctttatatctggccttcctgttttaatcatggtcaagttcaagaacttcgtgtcattttcagtacagaatgtt 27844  T
Q  411 gtttttctcctcgtacaatgtcgtgaagaatcttcctctccctggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27845 gtttttctcctcgtacaatgtcgtgaagaatcttcctctccctggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagc 27944  T
Q  511 tagcaaagtttccacaagcattatatgttaaacatttgcttcttggctgcttccatataactggcaaatcatcttccacccactgtatcacacctgtcga 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  27945 tagcaaagtttccacaagcattatatgttaaacatttgcttcttggctgcttccatataactagcaaatcatcttccacccactgtatcacacctgtgga 28044  T
Q  611 attgaggaacaatcttttattgttatact 639  Q
    |||||||||||||||||||||||||||||    
T  28045 attgaggaacaatcttttattgttatact 28073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 2485 - 2617
Alignment:
Q  93 tctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtag 192  Q
    |||||||||||||||| |||||||||||  ||| ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  2485 tctaatttaatcatcacatgcatacctacctctgatttatcaactaggacaatgagtctacgatcataatcccaattagtatactcttctttaagagtag 2584  T
Q  193 ttaaactttgtgtccagatccaacagtttgaag 225  Q
    ||||||||||||||||||||||||| |||||||    
T  2585 ttaaactttgtgtccagatccaacaatttgaag 2617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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