View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_low_20 (Length: 422)

Name: NF4458_low_20
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_low_20
NF4458_low_20
[»] chr8 (11 HSPs)
chr8 (20-199)||(23770920-23771099)
chr8 (22-199)||(5019427-5019608)
chr8 (22-109)||(23771082-23771169)
chr8 (355-414)||(5004202-5004261)
chr8 (26-89)||(5004813-5004876)
chr8 (355-414)||(5019212-5019271)
chr8 (26-109)||(5019593-5019673)
chr8 (35-109)||(5004865-5004936)
chr8 (26-103)||(5004938-5005016)
chr8 (26-72)||(5019799-5019845)
chr8 (65-109)||(5005005-5005049)
[»] scaffold0275 (10 HSPs)
scaffold0275 (22-199)||(20941-21118)
scaffold0275 (353-416)||(21272-21335)
scaffold0275 (20-76)||(11659-11715)
scaffold0275 (355-414)||(12367-12426)
scaffold0275 (26-109)||(11593-11676)
scaffold0275 (355-414)||(6730-6789)
scaffold0275 (255-288)||(21174-21207)
scaffold0275 (26-91)||(6131-6193)
scaffold0275 (33-109)||(6069-6142)
scaffold0275 (33-91)||(11790-11848)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 23771099 - 23770920
Alignment:
Q  20 gaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23771099 gaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaa 23771000  T
Q  120 cacataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23770999 cacataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgag 23770920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 5019608 - 5019427
Alignment:
Q  22 agctaacaacataagcaggtacacaataacaaacatgcataaattagtcc----ttctacaatacgattctcttttagccaacaacataagccacacacg 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||||||| ||  |||    
T  5019608 agctaacaatataagcaggtacacaataacaaacatgcataaattagtccaaccttctgcaatacgattctcttttagccaacaacataagctacgtacg 5019509  T
Q  118 aacacataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgag 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5019508 aacacataaataacccactaacacataaatttcaaacctataattgagtacttcaataactgctccaacattaataattgag 5019427  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 23771169 - 23771082
Alignment:
Q  22 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  23771169 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 23771082  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 5004261 - 5004202
Alignment:
Q  355 cagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttct 414  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  5004261 cagctcctgggcccatatcagtaggcacagccgtatcagcctccaactcttccttcttct 5004202  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 5004876 - 5004813
Alignment:
Q  26 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctc 89  Q
    |||||||||||||||| ||| |||| ||||||||||| |||||| |||||||||||| ||||||    
T  5004876 aacaacataagcaggtccacgataataaacatgcatacattagttcttctacaatacaattctc 5004813  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 5019271 - 5019212
Alignment:
Q  355 cagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttct 414  Q
    ||||||||||||||||||| ||||||| || | || ||||||||||||||||||||||||    
T  5019271 cagctcctgggaccatatcggtaggcaaagtcttatcagcctccaactcttccttcttct 5019212  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 5019673 - 5019593
Alignment:
Q  26 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 109  Q
    ||||||||| ||||   ||||||||||||||||||||||||||||   ||||||||| |||||||| |||| ||||| ||||||    
T  5019673 aacaacatatgcagacccacaataacaaacatgcataaattagtc---ctacaatacaattctcttgtagctaacaatataagc 5019593  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 5004936 - 5004865
Alignment:
Q  35 agcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 109  Q
    |||||||  ||||||| || ||||||||||||||||||||   ||||| |||||||| |||||||||||||||||    
T  5004936 agcaggtcgacaataataagcatgcataaattagtccttc---aatacaattctcttctagccaacaacataagc 5004865  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 5005016 - 5004938
Alignment:
Q  26 aacaacataagcaggtacacaataacaaacatgcataaattagtccttct-acaatacgattctcttttagccaacaac 103  Q
    |||||||||||||||| |||||||| || ||||||||||||||| ||||| | ||||| | |||||| ||| |||||||    
T  5005016 aacaacataagcaggtccacaataataatcatgcataaattagttcttctgaaaatacaaatctcttctaggcaacaac 5004938  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 5019845 - 5019799
Alignment:
Q  26 aacaacataagcaggtacacaataacaaacatgcataaattagtcct 72  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||    
T  5019845 aacaacataagcagacccacaataacaaacatgcataaattagtcct 5019799  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 5005049 - 5005005
Alignment:
Q  65 ttagtccttctacaatacgattctcttttagccaacaacataagc 109  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||    
T  5005049 ttagtccttctccaatacaattctcttatagccaacaacataagc 5005005  T

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Target: scaffold0275 (Bit Score: 174; Significance: 2e-93; HSPs: 10)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 20941 - 21118
Alignment:
Q  22 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaaca 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20941 agctaacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagccacacacgaaca 21040  T
Q  122 cataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataattgag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21041 cataaataactcactaacacataaatttcaaacctataattgagtacttcagtaactgctccaacattaataactgag 21118  T

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Target: scaffold0275; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 353 - 416
Target Start/End: Original strand, 21272 - 21335
Alignment:
Q  353 aacagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttctct 416  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21272 aacagctcctgggaccatatcagtaggcatagccctaacagcctccaactcttccttcttctct 21335  T

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Target: scaffold0275; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 11659 - 11715
Alignment:
Q  20 gaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttcta 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11659 gaagctaacaacataagcaggtacacaataacaaacatgcataaattagtccttcta 11715  T

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Target: scaffold0275; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 12367 - 12426
Alignment:
Q  355 cagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttct 414  Q
    |||||||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  12367 cagctcctcggaccatatcagtaggcaaagccgtatcagcctccgactcttccttcttct 12426  T

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Target: scaffold0275; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 11593 - 11676
Alignment:
Q  26 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 109  Q
    ||||||||||||||   |||| |||| |||||||||||||||||||||||| ||||| ||| ||||  ||| ||||||||||||    
T  11593 aacaacataagcagacccacagtaacgaacatgcataaattagtccttctagaatacaattatcttgaagctaacaacataagc 11676  T

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Target: scaffold0275; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 6730 - 6789
Alignment:
Q  355 cagctcctgggaccatatcagtaggcatagccgtaacagcctccaactcttccttcttct 414  Q
    |||||||| |||||||||||||||||| |||| || |||| ||| |||||||||||||||    
T  6730 cagctcctcggaccatatcagtaggcaaagccctatcagcttccgactcttccttcttct 6789  T

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Target: scaffold0275; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 21174 - 21207
Alignment:
Q  255 cttgagccggtatcagcagccacagccctatcag 288  Q
    ||||||||||||||||||||||||||||||||||    
T  21174 cttgagccggtatcagcagccacagccctatcag 21207  T

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Target: scaffold0275; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 6131 - 6193
Alignment:
Q  26 aacaacataagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctctt 91  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||   ||||||||||| ||||||||    
T  6131 aacaacacaagcaggtccacaataataaacatgcatacattag---ttctacaatacaattctctt 6193  T

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Target: scaffold0275; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 6069 - 6142
Alignment:
Q  33 taagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctcttttagccaacaacataagc 109  Q
    |||||||||  ||||||| || |||||||||||||||||||   ||||||  ||||||| |||||||||||| ||||    
T  6069 taagcaggtcgacaataataagcatgcataaattagtcctt---caatacagttctcttatagccaacaacacaagc 6142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 11790 - 11848
Alignment:
Q  33 taagcaggtacacaataacaaacatgcataaattagtccttctacaatacgattctctt 91  Q
    |||||||||  ||||||| || |||||||| |||||||||||||| |||| ||||||||    
T  11790 taagcaggtcgacaataataagcatgcatatattagtccttctacgatacaattctctt 11848  T

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