View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_21 (Length: 406)
Name: NF4458_low_21
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 122 - 395
Target Start/End: Original strand, 47893422 - 47893696
Alignment:
| Q |
122 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatgcatag---cat--tgatatt |
216 |
Q |
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| T |
47893422 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatacataggcacatgatattatt |
47893521 |
T |
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| Q |
217 |
catttctttctatatatagctagctagctacacgagtcacactgcaatcaattactcctctcactcactcatacaccattccttaatccatccgaaacca |
316 |
Q |
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| T |
47893522 |
catttctttctatatatagc----tagctacacgagtcacactgcaatcaattactcctctcagtcactcatacaccattccttaatccatccgaaacca |
47893617 |
T |
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| Q |
317 |
tgatcaaaattccaaaccttaaaatccctgagtggaacacaacacattacgaggaagtaccattctccaaccatttcat |
395 |
Q |
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| T |
47893618 |
tgatcaaaattccaaaccttaaaatccctgagtggaacacaacacaatacgaggaagtaacattctccaaccatttcat |
47893696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 47893256 - 47893378
Alignment:
| Q |
1 |
aaatgaagacaaaatggagggtggtttatcaattccatcaaaacaaagtcgacaaattggatatttaggagaagtttacaagatttgcatatatattgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47893256 |
aaatgaagacaaaatggagggtggtttatcaattccatcaaaacaaagtcgacaaattggatatttaggagaagtttacaagatttgcatatatattgat |
47893355 |
T |
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| Q |
101 |
aagtttggcatttgcatttttag |
123 |
Q |
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| T |
47893356 |
aagtttggcatttgcatttttag |
47893378 |
T |
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