View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_24 (Length: 391)
Name: NF4458_low_24
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 53635607 - 53635975
Alignment:
| Q |
13 |
tgtgatgttttgtactctgattttgtctttttgcagaagaagaagaaga------tctagaacggaacttcaggagaattcgtccacaattatgagctag |
106 |
Q |
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| T |
53635607 |
tgtgatgttttgtactctgattttgtctttttgcagaagaagaagaagaagaagatctagaaca-aacttcaggagaattcgtccacaattatgagctag |
53635705 |
T |
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| Q |
107 |
aaaaatgtggttttaacgatctcttccttagtttaaaccaaatgagttttgtgaagtacaatatttatactttaagctctagcaaatatcatcgtatgaa |
206 |
Q |
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| T |
53635706 |
aaaaatgtggttttaacgatctcttccttagtttaaaccaaatgagttttgtgaagtacaatatttatactttaatctctagcaaatatcatcgtatgaa |
53635805 |
T |
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| Q |
207 |
tgttgaattatgcttcagggatggatttggcgtatttacgagagccaaaacacattatatccaaatcactcttgtagttttgttccaatagccaacaaca |
306 |
Q |
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| T |
53635806 |
tgttgaattatgcttcagggatggatttggcgtatttacgagagccaaaacacattatatccaaatcactcttgtagttttgttccaatagccaacaaca |
53635905 |
T |
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| Q |
307 |
tcactaattatttcaaaagctaattcttatccattttatctccccttttcaactatcaagtggccctttg |
376 |
Q |
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| T |
53635906 |
tcactaattatttcaaaagctaattcttatccattttatctccccttttcaactatcaagtggccctttg |
53635975 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 48336535 - 48336479
Alignment:
| Q |
309 |
actaattatttcaaaagctaattcttatccattttatctccccttttcaactatcaagtg |
368 |
Q |
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| T |
48336535 |
actatttatttcaaaagctaattctcatccattttat---ccctcttcaactatcaagtg |
48336479 |
T |
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