View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_low_27 (Length: 356)

Name: NF4458_low_27
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_low_27
NF4458_low_27
[»] chr2 (5 HSPs)
chr2 (19-350)||(11845054-11845385)
chr2 (19-350)||(11849783-11850114)
chr2 (215-319)||(11853005-11853109)
chr2 (215-311)||(2015259-2015355)
chr2 (48-92)||(718434-718478)
[»] chr3 (8 HSPs)
chr3 (46-103)||(40598037-40598094)
chr3 (46-103)||(40598097-40598154)
chr3 (217-313)||(40591285-40591381)
chr3 (215-314)||(40579436-40579535)
chr3 (225-313)||(40568379-40568467)
chr3 (46-86)||(40597994-40598034)
chr3 (215-274)||(40597806-40597865)
chr3 (215-311)||(40572982-40573078)
[»] chr8 (1 HSPs)
chr8 (50-91)||(36870911-36870952)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 11845385 - 11845054
Alignment:
Q  19 ccgaaatctgctaattttgccctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11845385 ccgaaatctgctaattttgccctatacttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagt 11845286  T
Q  119 aaaataatgctccggcgatttcagttgcaattctcaaacgcatgtcccatgtcattggtatgtcctcgttttgggcatgcaaatactgaaaaaggttacc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11845285 aaaataatgctccggcgatttcagttgcaattctcaaacgcatgtcccatgtcattggtatgtcctcgttttgggcatgcaaatactgaaaaaggttacc 11845186  T
Q  219 attaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctgttattgatttgtgaaagaataaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  11845185 attaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaagaataaca 11845086  T
Q  319 aactcgttaataaactcttcgacctttgcttc 350  Q
    ||||||||||||||||||||||||||| ||||    
T  11845085 aactcgttaataaactcttcgacctttccttc 11845054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 11850114 - 11849783
Alignment:
Q  19 ccgaaatctgctaattttgccctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagt 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11850114 ccgaaatctgctaattttggcctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatgcaattgagtgtaagt 11850015  T
Q  119 aaaataatgctccggcgatttcagttgcaattctcaaacgcatgtcccatgtcattggtatgtcctcgttttgggcatgcaaatactgaaaaaggttacc 218  Q
    ||||||||||||| || ||||| ||  ||||||||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||| |||    
T  11850014 aaaataatgctccagcaatttccgtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcattttggtcgtgcaaatactgaaaaaggtcacc 11849915  T
Q  219 attaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctgttattgatttgtgaaagaataaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  11849914 attaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaagaataaca 11849815  T
Q  319 aactcgttaataaactcttcgacctttgcttc 350  Q
    ||||||||||||||||||||||||||| ||||    
T  11849814 aactcgttaataaactcttcgacctttccttc 11849783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 11853109 - 11853005
Alignment:
Q  215 taccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctgttattgatttgtgaaagaat 314  Q
    |||||||  ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| ||||||| |||||   | |||||||||||||||    
T  11853109 taccattgagaatgaattcataaataagcaatggaatatttgtctccaaacaacatcctaatatctagaccacaattctgcagtggatttgtgaaagaat 11853010  T
Q  315 aacaa 319  Q
    |||||    
T  11853009 aacaa 11853005  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 2015259 - 2015355
Alignment:
Q  215 taccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctgttattgatttgtgaaag 311  Q
    ||||||| ||||||||||| |||||||| || |||| ||||||||| |||||||| || || | ||| ||||||||||| |  ||||||||||||||    
T  2015259 taccattgggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaag 2015355  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 718478 - 718434
Alignment:
Q  48 ttcatcaagtagtatatttgtagatttgatatctctatgataaat 92  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||    
T  718478 ttcatcaagtagtatattggtagctttgatatccctatgataaat 718434  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 40598094 - 40598037
Alignment:
Q  46 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598094 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 40598037  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 40598154 - 40598097
Alignment:
Q  46 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598154 ttttcatctagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 40598097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 40591381 - 40591285
Alignment:
Q  217 ccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctgttattgatttgtgaaagaa 313  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| || || ||  | ||||||||||| |  |||||||| |||||||    
T  40591381 ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaa 40591285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 40579535 - 40579436
Alignment:
Q  215 taccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctgttattgatttgtgaaagaat 314  Q
    ||||||| ||||| ||||| |||||||| || |||| ||||||||| |||||||| || || ||||| ||||||||||| | ||||||||| ||||||||    
T  40579535 taccattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttgggaaagaat 40579436  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 313
Target Start/End: Complemental strand, 40568467 - 40568379
Alignment:
Q  225 aatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctgttattgatttgtgaaagaa 313  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| || || | ||| ||||||||||| |  |||||||| |||||||    
T  40568467 aatgaattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgggaaagaa 40568379  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 40598034 - 40597994
Alignment:
Q  46 ttttcatcaagtagtatatttgtagatttgatatctctatg 86  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  40598034 ttttcatcaagtagtatatttgtagatttgacatctctatg 40597994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 40597865 - 40597806
Alignment:
Q  215 taccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatccta 274  Q
    ||||||| ||||| |||||||||||||||||||||| |||||| || |||||||| ||||    
T  40597865 taccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaaccta 40597806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 311
Target Start/End: Complemental strand, 40573078 - 40572982
Alignment:
Q  215 taccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctgttattgatttgtgaaag 311  Q
    ||||||| ||||| |||||||| ||||  || |||| ||||||||| |||||||| || || ||||| ||||||||||| |  |||||||| |||||    
T  40573078 taccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaag 40572982  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 36870911 - 36870952
Alignment:
Q  50 catcaagtagtatatttgtagatttgatatctctatgataaa 91  Q
    |||||||||||||||| |||| |||||||||||| |||||||    
T  36870911 catcaagtagtatattggtagctttgatatctctgtgataaa 36870952  T

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