View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_29 (Length: 330)
Name: NF4458_low_29
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 343061 - 342751
Alignment:
| Q |
1 |
tggaacatttacttgatgatgatgaagatatggcggagatgtatcttactgagaagttacttcaacagcaattggaacaaacctctgatgaagacactgt |
100 |
Q |
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| T |
343061 |
tggaacatttacttgatgatgatgaagatatggcggagatgtatcttactgagaagttacttcaacagcaattggaacaaacctctgatgaagacactgt |
342962 |
T |
|
| Q |
101 |
tgaaactcctgatcatgatgttgatgataatggtgttgatattaatcaaagtgtaccggctgctgagattttgttggaagcgggtgtaggagggggtgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
342961 |
tgaaactcctgatcatgatgttgatgataatggtgttgatattaatcaaagtgtaccggctgctgagatttcgttggaagcgggtgtaggagggggggtg |
342862 |
T |
|
| Q |
201 |
aattatgtggaggaagatgaggataatctcaattctagagagcaaatgtttggtgcttcgaatttaagggatagccgcggaacacgtgcaagtactactt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
342861 |
aattatgtggaggaagatgaggataatctcaattctagagagcaaatgtttggtgcttcaaatttaagggatagccgcggaacacgtgcaagtactactt |
342762 |
T |
|
| Q |
301 |
acagtgtcacc |
311 |
Q |
| |
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||||||||||| |
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| T |
342761 |
acagtgtcacc |
342751 |
T |
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