View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_30 (Length: 330)
Name: NF4458_low_30
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 33512942 - 33512638
Alignment:
| Q |
19 |
gattccatgttattgaacctgttacttgatgaagcattaatcatttctgaattcaaaaacataagatcagaagaactaacattgctccatctatgcttaa |
118 |
Q |
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| T |
33512942 |
gattccatgttattgaacctgttacttgatgaagcattaatcatttctgaattcaaaaacataagatcagaagaactaacattgctccatctatgcttaa |
33512843 |
T |
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| Q |
119 |
acacaacatcagatatagtaatcttgtgattatgcttatgataagctttattgttagaatcacttttttctataagcaattcttcttcctttgaaataat |
218 |
Q |
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| T |
33512842 |
acacaacatcagatatagtaatcttgtgattatgcttatgataagctttattgttagaatcacttttttctataagcaattcttcttcctttgaaataat |
33512743 |
T |
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| Q |
219 |
acctttttcttcttccttaaatatagtagtagcttttccaattttcctaaagctgcttccaatactaaaccttgatgaaccatgttgattattatcttct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33512742 |
acctttttcttcttccttaaatatagtagtagcttttccaattttcctaaagctgcttccaatactaaaccttgatgaaccatgttgattattatcttct |
33512643 |
T |
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| Q |
319 |
tctct |
323 |
Q |
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||||| |
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| T |
33512642 |
tctct |
33512638 |
T |
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