View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_low_32 (Length: 315)

Name: NF4458_low_32
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_low_32
NF4458_low_32
[»] chr3 (1 HSPs)
chr3 (1-298)||(52732672-52732969)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 52732969 - 52732672
Alignment:
Q  1 ctaaaacaactttgactccattaaaattaaaccaaataagatacaccatgagagtgtgatatgtagtttccagaatgtgaagaaagaggaatacaatagg 100  Q
    ||||||||||||||||||| ||||||||||| | ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52732969 ctaaaacaactttgactcccttaaaattaaaaccaaacagacacaccatgagagtgtgatatgtagtttccagaatgtgaagaaagaggaatacaatagg 52732870  T
Q  101 aggaggagtgaaacgaatgataacaagaggaggaggtgtgtgtgagtgaagattctctcgtgcacacaaaatcttaattttagctgtcagctttgtgtac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52732869 aggaggagtgaaacgaatgataacaagaggaggaggtgtgtgtgagtgaagattctctcgtgcacacaaaatcttaattttagctgtcagctttgtgtac 52732770  T
Q  201 ttgtttatttattcgtggaaacgcaattaagactccaactggcttggtctgggtggtatccgaccggttcatgcaggccgggtctgacccacaaactt 298  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52732769 ttatttatttattcgtggaaacgcaattaagactccaactggcttggtctgggtggtatccgaccggttcatgcaggccgggtctgacccacaaactt 52732672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University