View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_33 (Length: 310)
Name: NF4458_low_33
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 47892973 - 47893255
Alignment:
| Q |
19 |
agatgaaccgtagacgacaaattagcattaattgctagaaaagtactatttccgtcttatattttagtataatttagattatctaatctacannnnnnna |
118 |
Q |
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| T |
47892973 |
agatgaaccgtagacgacaaattagcattaattgctagaaaagtactatttccgtcttatattttagtataatttagattatctaatctacattttttta |
47893072 |
T |
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| Q |
119 |
ataaaattattaaatggattaagatagtatcatatcaaggtattagtnnnnnnnntgtgattaaannnnnnnagtattttaaaataacaaataattacat |
218 |
Q |
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| T |
47893073 |
ataaaattattaaatggattaagatagtatcatatcaaggtattagtaaaaaaaatgtgattaaatttttttagtattttaaaataacaaataattacat |
47893172 |
T |
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| Q |
219 |
gagataattatctgtttgaggaaaagcatacagtactacttaagatgagagagagatatttaaattaaacttatatcgaattg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
47893173 |
gagataattatctgtttgaggaaaagcatacagtactacttaagatgagagagatagatttaaattaaacttatatcgaattg |
47893255 |
T |
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