View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_40 (Length: 295)
Name: NF4458_low_40
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 14142913 - 14143190
Alignment:
| Q |
1 |
tcagaacttaattttgttaaagtggaacaagacattgttgagcagaaattcaaccataactgattgcaaattgtcttatcaagccttctttctatatgag |
100 |
Q |
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| T |
14142913 |
tcagaacttaattttgttaaagtggaacaagacattgttgagcagaaattcaaccataactgattgcaaattgtcctatcaagccttctttctatatgag |
14143012 |
T |
|
| Q |
101 |
ctctacctcctctaccattattccaagtaaaccaggctcctctagttggtaaatgcagcaaatcattattactgggccaatcttgaaaatcagacatagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14143013 |
ctctacctcctctaccattattccaagtaaaccaggctcctctagttggtaaatgcagcaaatcattattactggaccaatcttgaaaatcagacatagg |
14143112 |
T |
|
| Q |
201 |
gatcctagcaggatctaacctacctctatgctcactagcttccaaaattgcattaaaatcacctatataacaccatgg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14143113 |
gatcctagcaggatctaacctacctctatgctcactagcttccaaaattgcattaaaatcacctatataacaccatgg |
14143190 |
T |
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