View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_low_48 (Length: 243)

Name: NF4458_low_48
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_low_48
NF4458_low_48
[»] chr4 (23 HSPs)
chr4 (1-237)||(5035264-5035500)
chr4 (2-217)||(2533956-2534171)
chr4 (15-227)||(2525411-2525623)
chr4 (32-227)||(2490801-2490996)
chr4 (23-214)||(2518897-2519088)
chr4 (36-170)||(2547221-2547355)
chr4 (29-230)||(2467212-2467416)
chr4 (36-94)||(2471733-2471791)
chr4 (35-89)||(5106632-5106686)
chr4 (37-89)||(2367981-2368033)
chr4 (30-157)||(2621413-2621540)
chr4 (32-89)||(2460279-2460336)
chr4 (38-89)||(2373547-2373598)
chr4 (38-87)||(12124524-12124573)
chr4 (37-153)||(2381645-2381761)
chr4 (38-93)||(2391333-2391388)
chr4 (122-209)||(2477349-2477436)
chr4 (80-214)||(2486021-2486162)
chr4 (36-164)||(2393836-2393963)
chr4 (32-85)||(2477256-2477309)
chr4 (40-89)||(2546825-2546874)
chr4 (36-77)||(2625589-2625630)
chr4 (36-80)||(2363162-2363206)
[»] chr8 (1 HSPs)
chr8 (37-82)||(18314718-18314763)
[»] chr5 (1 HSPs)
chr5 (37-81)||(28673354-28673398)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5035264 - 5035500
Alignment:
Q  1 agcacaattatggggacaaccagtatcagtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  5035264 agcacaattatggggacaaccagtatcagtaaggattagttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgataaatctc 5035363  T
Q  101 atttgataacaagtgagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatt 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5035364 atttgataacaagcgagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtaaagagtgagcgatt 5035463  T
Q  201 tgaggtctaaaggggaaacggagattttggctagaaa 237  Q
    |||||| |||||||||| |||||||||| ||||||||    
T  5035464 tgaggtttaaaggggaagcggagattttcgctagaaa 5035500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 2533956 - 2534171
Alignment:
Q  2 gcacaattatggggacaaccagtatcagtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctca 101  Q
    ||||||||||||||||||||||  || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  2533956 gcacaattatggggacaaccagagtcggtaaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctca 2534055  T
Q  102 tttgataacaagtgagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgattt 201  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||| ||| ||| ||||||||||| |||||||||    
T  2534056 tttgataacaagtgagagatgttaaatttttcatcttcttggacaaagctcggaactcattttcaggaacactgtcagggtggtagagagtgagcgattt 2534155  T
Q  202 gaggtctaaaggggaa 217  Q
    ||||||||||| ||||    
T  2534156 gaggtctaaagtggaa 2534171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 2525411 - 2525623
Alignment:
Q  15 gacaaccagtatcagtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagt 114  Q
    |||||||||| || |||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||| ||||||||||||    
T  2525411 gacaaccagtgtcggtaaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaataaatctcagttgataacaagt 2525510  T
Q  115 gagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaaggg 214  Q
    |||||| || ||| ||||||| |||| ||||||| | ||||||||||||| ||||||| ||   | ||||||||||| ||||||||||||||||||||||    
T  2525511 gagagatgtcaaatttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaaggg 2525610  T
Q  215 gaaacggagattt 227  Q
     ||  ||||||||    
T  2525611 aaagtggagattt 2525623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 2490801 - 2490996
Alignment:
Q  32 aggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttt 131  Q
    ||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||| |||||||||||||||| || ||| |||    
T  2490801 aggatgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttt 2490900  T
Q  132 tcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagattt 227  Q
    ||||| || |||||||||||||||| |||||| | ||||||||||  |  | |||||||||||||||||||||||| |||||| ||  ||||||||    
T  2490901 tcatcgtcccggacaaagctcgcaattcatttgcgggaaccctgattggctcgtagagagcgagcgatttgaggtccaaagggaaagtggagattt 2490996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 2518897 - 2519088
Alignment:
Q  23 gtatcagtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacg 122  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| |||| || |||||| ||||||||||||| | |    
T  2518897 gtatcggtaaggatgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatg 2518996  T
Q  123 ttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaaggg 214  Q
    | ||| ||||||| || |  ||||||||| ||||| | | || |||||   ||| ||  |||||||||| ||||||| ||||||||||||||    
T  2518997 tcaaatttttcatgttttgagacaaagcttgcaacccttctttaggaagggtgataggatggtagagagtgagcgatatgaggtctaaaggg 2519088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 2547221 - 2547355
Alignment:
Q  36 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttttcat 135  Q
    |||||||||| |||||||||||||||||||| || ||||| | |||||||||| |||||||  | ||||   ||||| |||||||||| ||| |||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  136 cttctcggacaaagctcgcaactcattttcaggaa 170  Q
    ||| || ||||||||||||||| ||||| ||||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcaggaa 2547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 2467212 - 2467416
Alignment:
Q  29 gtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgat---aaatctcatttgataacaagtgagagacgtta 125  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||||| |||   |||    ||| | ||||||||||| || || |    
T  2467212 gtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 2467311  T
Q  126 aacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagat 225  Q
    || |||||||||  | ||| |||||||||||| ||| | |||||||| | |  | ||||||||||| ||| ||||||||||| |||||| ||  ||||||    
T  2467312 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 2467411  T
Q  226 tttgg 230  Q
    |||||    
T  2467412 tttgg 2467416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 2471733 - 2471791
Alignment:
Q  36 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgata 94  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||    
T  2471733 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgata 2471791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 5106686 - 5106632
Alignment:
Q  35 atgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 89  Q
    |||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  5106686 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 5106632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  37 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 89  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 2621540 - 2621413
Alignment:
Q  30 taaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaact 129  Q
    ||||| ||||||||||||||||||||||||||||||| |  ||||| ||||||||||||  |||     | ||| | |||||||||||||| || ||| |    
T  2621540 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatt 2621441  T
Q  130 tttcatcttctcggacaaagctcgcaac 157  Q
    |||||| || | ||| ||||||||||||    
T  2621440 tttcatatttttggagaaagctcgcaac 2621413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 2460279 - 2460336
Alignment:
Q  32 aggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 89  Q
    |||||||||||||||||||| || ||||||||||| || |||||||||| ||||||||    
T  2460279 aggatgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttgt 2460336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 2373598 - 2373547
Alignment:
Q  38 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 89  Q
    ||||||||||| ||||||||||||||||| || |||||||||||| ||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttgt 2373547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 12124524 - 12124573
Alignment:
Q  38 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattctt 87  Q
    |||||||| |||||||||||||||||||| || |||||||||||| ||||    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 12124573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 2381761 - 2381645
Alignment:
Q  37 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttttcatc 136  Q
    ||||||||||||||||||||| |||||  | || || |||| ||| |||||||||||  |  | |||| | ||||||| ||||| || ||| ||||||||    
T  2381761 gagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagagaggtcaaatttttcatc 2381662  T
Q  137 ttctcggacaaagctcg 153  Q
    || | ||||||||||||    
T  2381661 tttttggacaaagctcg 2381645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 2391388 - 2391333
Alignment:
Q  38 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgat 93  Q
    |||||||||||||||||||| |||||| | || ||||||| ||| |||||||||||    
T  2391388 agttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgat 2391333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 2477349 - 2477436
Alignment:
Q  122 gttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtcta 209  Q
    |||||| |||||||||| |  |||||||||| |||| ||||| |||||||| ||   | |||||||||||| |||||| |||||||||    
T  2477349 gttaaatttttcatcttttttgacaaagctctcaacccatttacaggaaccgtggtggggtggtagagagctagcgatctgaggtcta 2477436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 2486021 - 2486162
Alignment:
Q  80 tcattcttgttgataaatctcatttgataacaagtga-------gagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaacc 172  Q
    |||||||||||||||||||| |||| ||||||| |||       |||| || ||| |||||||||| | ||||||||||||||   ||||| |||||| |    
T  2486021 tcattcttgttgataaatctaattttataacaattgactattgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaagc 2486120  T
Q  173 ctgacagcgtggtagagagcgagcgatttgaggtctaaaggg 214  Q
    ||||  |  | |||||||| ||| ||||||||||| ||||||    
T  2486121 ctgatgggctcgtagagagtgagtgatttgaggtccaaaggg 2486162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 2393963 - 2393836
Alignment:
Q  36 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaa-cttttca 134  Q
    ||||||||| ||||||||||||| ||||||| || || |||||| ||||||||  |||||   ||||||  ||  | |||||||| || |||  ||||||    
T  2393963 tgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttgcagataatagtcattt--tagaatgtgagagatgtcaaattttttca 2393866  T
Q  135 tcttctcggacaaagctcgcaactcatttt 164  Q
    |||| | |||||||||||||||| ||||||    
T  2393865 tcttttgggacaaagctcgcaacccatttt 2393836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 2477256 - 2477309
Alignment:
Q  32 aggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattc 85  Q
    |||||||||||||| || ||||||||||||| ||  || |||||||||||||||    
T  2477256 aggatgagttcttctagcaaagggaaacaattagaaatgaagaagagatcattc 2477309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 2546825 - 2546874
Alignment:
Q  40 ttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 89  Q
    ||||||||||||||| ||||||||||| || ||||| | |||||||||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgt 2546874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 2625630 - 2625589
Alignment:
Q  36 tgagttcttcgagtaaagggaaacaatcagcgatcaagaaga 77  Q
    ||||||||||||||||||||||||||||| | || |||||||    
T  2625630 tgagttcttcgagtaaagggaaacaatcaacaataaagaaga 2625589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 2363206 - 2363162
Alignment:
Q  36 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagat 80  Q
    ||||||| ||||| ||||||||||||||||| || ||||||||||    
T  2363206 tgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 18314763 - 18314718
Alignment:
Q  37 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatca 82  Q
    |||||||||||| ||||||||||||||||| || | ||||||||||    
T  18314763 gagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 28673398 - 28673354
Alignment:
Q  37 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatc 81  Q
    |||||||||||| |||||||| |||||||| || |||||||||||    
T  28673398 gagttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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