View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_49 (Length: 239)
Name: NF4458_low_49
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40755977 - 40755756
Alignment:
| Q |
1 |
ttgcaaaagatagtattagaattactgttaattctattgacaaaagtgcaaataaaagttgtaccatttttgtagaactacttgaatatcggtttctatg |
100 |
Q |
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| T |
40755977 |
ttgcaaaagatagtattagaattactgttaattctattgacaaaagtgcaaataaaagttgtaccatttttgtagaactacttgaatatcggtttctatg |
40755878 |
T |
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| Q |
101 |
gtgaaaatgtaagaagtttgaatcctccaaatcaaactcttattttgtaccttgttcttagaagttgcttatggaaagtgaaaaggtttggtaaagaatt |
200 |
Q |
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| T |
40755877 |
gtgaaaatgtaagaagtttgaatcctccaaatcaaactcttattttgtaccttgttcttagaagttgcttatggaaagtgaaaaggtttggtaaagaatt |
40755778 |
T |
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| Q |
201 |
atgctatgctttccttttttac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
40755777 |
atgctatgctttccttttttac |
40755756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 40743461 - 40743245
Alignment:
| Q |
1 |
ttgcaaaagatagtattagaattactgttaattctattgacaaaagtgcaaataaaagttgtaccatttttgtagaactacttgaatatcggtttctatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
40743461 |
ttgcaaaagatagtattagaattactgttaattctattgacaaaagtgcaaataaaagttgtaacatttttgtagaactacttgaatattggtttctatg |
40743362 |
T |
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| Q |
101 |
gtgaaaatgtaagaagtttgaatcctccaaatcaaactcttattttgtaccttgttcttagaagttgcttatggaaagtgaaaaggtttggtaaagaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||| | || ||||||||||| |
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| T |
40743361 |
gtgaaaatgtaagaagtttgaatcctccaaatcaaactcttattttgtaccttgttcttaatggctgcttatagaaagttaaatgattgggtaaagaatt |
40743262 |
T |
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| Q |
201 |
atgctatgctttccttt |
217 |
Q |
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||| |||||||| |||| |
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| T |
40743261 |
atgttatgcttttcttt |
40743245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 40766847 - 40766780
Alignment:
| Q |
151 |
cttgttcttagaagttgcttatggaaagtgaaaaggtttggtaaagaattatgctatgctttccttttt |
219 |
Q |
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||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
40766847 |
cttgttcttagaagttgct-atggaaagtgaaatgatttggtaaagaattatgctatgctttccttttt |
40766780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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