View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_5 (Length: 614)
Name: NF4458_low_5
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 331 - 604
Target Start/End: Original strand, 9221714 - 9221987
Alignment:
| Q |
331 |
atatattcattaattttacaacattattcatgttaacagaaatggttgcataccagtctcatgaagggttccaagaagagcaatggctccataaacatat |
430 |
Q |
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| T |
9221714 |
atatattcattcattttataacattattcatgttaacagaaatagttgcataccagtctcatgaagggttccaagaagagcaatggctccataaacatat |
9221813 |
T |
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| Q |
431 |
caatattcctgaattaggcacaaaaatgtatgtcattaaactgtaagaaatcttgattagttgaaaaaccacaatgatttaaattgttgttttcatcctt |
530 |
Q |
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| T |
9221814 |
caatattcctgaattaggcacaaaaatgtatgtcattaaactgtaagcaatcttgattagttgaaaaaccacaatgatttaaa-tgttgttttcatcctt |
9221912 |
T |
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| Q |
531 |
ctattttgggaaaaccgccgttttgctccccctatttctaatcataaaattttggtccccc-tttcatttgatga |
604 |
Q |
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| T |
9221913 |
ctattttgggaaaaccgccgttttgctccccctatttctaatcatagaattttggtcccccgtttcatttgatga |
9221987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 37 - 294
Target Start/End: Original strand, 9221418 - 9221675
Alignment:
| Q |
37 |
ctatggttttattttttctctattaataaaattatttttgcatnnnnnnntgtacctaaagttaacaaatggagcatggcatgattcatgacaaggcttt |
136 |
Q |
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| T |
9221418 |
ctatggttttattttttctctattaataaaattatttttgcataaaaaaatgtacctaaagttaacaaatggaccatggcatgattcatgacaaggcttt |
9221517 |
T |
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| Q |
137 |
tataaagctagtttcatgaagaagaataataaggcaaccagagatatcacagcaagcacaattctttttcccttattcccatattctgatcctgttaatg |
236 |
Q |
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| T |
9221518 |
tataaagctagtttcatgaagaagaataataaggcaaccagagatatcacagcaagcacaattctttttcccttattcccatattctgatcctgttaatg |
9221617 |
T |
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| Q |
237 |
aacttatcttcaagatctcttggacacttgccttcattttctgcatcaggggacacat |
294 |
Q |
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| T |
9221618 |
aacttatcttcaagatctcttggacacttgccttcattttctgcatcaggggacacat |
9221675 |
T |
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