View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4458_low_53 (Length: 234)
Name: NF4458_low_53
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_53 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 15097186 - 15096962
Alignment:
| Q |
1 |
catctaataatagacgcttaacacgtaccattatttattcaagtaaaacaagaaacatgtgtgtcaatgaataaaacaaatatgaaatatacccataaag |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15097186 |
catctaatgttagactcttaacacgtaccattatttattcaagtaaaacaagaaacatgtgtgtcaatgaataaaacaaatatgaaatatacccataaag |
15097087 |
T |
|
| Q |
101 |
gaatcagtggttggttcccagtgttcatcaaaatcctcaggtgggaattcaacctcaaccaaagcaagctttggttcaactctttgagtacatgctctcc |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15097086 |
gaatcagtggtaggttcccagtgttcatcaaaagcctcaggtgggaattcaacctcaaccaaagcaagctttggttcaactctttgagtacatgctctcc |
15096987 |
T |
|
| Q |
201 |
cttttgaattcacaaccatccattg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15096986 |
cttttgaattcacaaccatccattg |
15096962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 15091159 - 15091030
Alignment:
| Q |
89 |
atacccataaaggaatcagtggttggttcccagtgttcatcaaaatcctcaggtgggaattcaacctcaaccaaagcaagctttggttcaactctttgag |
188 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15091159 |
atacccataaaggaatcagtggtaggttcccagtgttcatcaaaagcttcaggtggaagttcaacctcaaccaaagcaagttttggttcaactctttgag |
15091060 |
T |
|
| Q |
189 |
tacatgctctcccttttgaattcacaacca |
218 |
Q |
| |
|
| |||||||| ||||||||||||||||||| |
|
|
| T |
15091059 |
tgcatgctcttccttttgaattcacaacca |
15091030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 15101589 - 15101449
Alignment:
| Q |
82 |
atgaaatatacccataaaggaatcagtggttggttcccagtgttcatcaaaatcctcaggtgggaattcaacctcaaccaaagcaagctttggttcaact |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| | |||||| |||| |||||||| | ||||||||||| |
|
|
| T |
15101589 |
atgaaatatacccataaaggaatcagtggttggttcccagtgttgaagaaatgcctcaggtggtagttcaacatcaatcaaagcaaaccttggttcaact |
15101490 |
T |
|
| Q |
182 |
ctttgagtacatgctctcccttttgaattcacaaccatcca |
222 |
Q |
| |
|
||| ||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
15101489 |
cttatagtgcatgccctcccttttgaattgacaaccatcca |
15101449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University